PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538730.1_FGP023
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1106aa    MW: 123698 Da    PI: 7.295
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538730.1_FGP023genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.54.1e-5681252118
               CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                        lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een+
  KN538730.1_FGP023   8 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENE 99 
                        45559*************************************************************************************** PP

               CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                        +fqrr+yw+Lee++ +ivlvhyle+k
  KN538730.1_FGP023 100 NFQRRTYWMLEEDFMHIVLVHYLETK 125
                        ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.934130IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-777125IPR005559CG-1 DNA-binding domain
PfamPF038599.4E-5010123IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.8E-6439525IPR013783Immunoglobulin-like fold
CDDcd001020.00934439527No hitNo description
PfamPF018331.3E-8440518IPR002909IPT domain
SuperFamilySSF812961.87E-18440526IPR014756Immunoglobulin E-set
SuperFamilySSF484033.58E-15632735IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.4E-16635737IPR020683Ankyrin repeat-containing domain
CDDcd002042.17E-11635733No hitNo description
PROSITE profilePS5029715.433641735IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736674706IPR002110Ankyrin repeat
SuperFamilySSF525406.37E-8834887IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37836858IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748837866IPR000048IQ motif, EF-hand binding site
PfamPF006120.025838857IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0059859881IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542861884IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4862881IPR000048IQ motif, EF-hand binding site
Gene3DG3DSA:3.40.50.18205.8E-169391072IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534741.47E-159961072IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MTHIAQILKE AQQRWLRPAE ICEILKNYKS FRIAPEPPNR PQSGSLFLFD RKVLRYFRKD  60
GHNWRKKKDG KTVKEAHERL KSGSIDVLHC YYAHGEENEN FQRRTYWMLE EDFMHIVLVH  120
YLETKGGKSR TRGNNDMHQA AVMDSPLSQL PSQTIDGESS LSGQFSEYEE AESGGTGYHS  180
FTQMQQQQNG IGPVTDASMF SSRVSASSIG NYQGQHAMGH TTNFYSSSQH DSPLVLSDPN  240
LELANNGHES LWNGVMKPDE GTVQMTHLQP PVHPEQGMFT TEGQGVEYLT FDEVYSDGLS  300
LKDIGAAGAD VEPFWQFSSN SYLTEAIAFQ LSSATADISA TENSVQQNDG SLGAAIGFPF  360
LKTQSSNLSD ILKDSFKKSD SFTRWMSKEL LDVEDSQIQS SSGAYWNTEE ADSIIEASSR  420
EPLDQFTVAP MVLQDQLFSI VDFSPSWTYA GSKTKVLVTG RFLHANEVTE RCKWSCMFGE  480
VEIPAEISAD GTLRCYSPPH KPGRVPFYVT CSNRLACSEV REFEFRPSDS QYMDAPSPLG  540
ATNKFYFQIR LDNLLSLGPD VYQATITNPS KEMIDLSKKI SSLLANNDEW SKLLKLADDN  600
EPLSHDQQDQ YAENLIKEKL HDWLLYKVGD GGKGPSVLDD EGLGVLHLAA ALGYDWAIRP  660
TVTAGVNINF RDFHGWTALH WAAFCGRERT VVALIALGAA PGALTDPHPN YPAESTPADL  720
ASANGHKGIS GFLAESSLTS HLQALNLKEA NMSEISGLPG IGDITERNAS QPAIGDSLGA  780
VRNAAQAAAR IYQVFRVQSF QRKQAVQYEG DKGGISDEHA LSLLSMKPSK SGQLDPLHAA  840
ASRIQNKYRG WKGRKEFLLF RQRIVKIQAH VRGHQVRKHY RKIVWSVGIV EKVILRWRRR  900
RAGLRGFRPT EGAIESSSGG TSSNLVKDKP AGDDYDFLQE GRKQTEERLQ KALARVKSMV  960
QYPEARDQYQ RILNVVSKMQ ESQVMCTENV KEKTELLHAL INGKKLSDLP KINQQTLIIW  1020
GEQDRVFPLE LGLRLKRHLG DTSELVIVKN AGHAINREKP AELCRLIKNY IADPSVKYRD  1080
GHKGSWKSAI KRFAGSSLRK CIYRMQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538730.1_FGP023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051160.0AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614397.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLA0A0E0QYD90.0A0A0E0QYD9_ORYRU; Uncharacterized protein
STRINGORUFI10G08490.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains