PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538731.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 239aa    MW: 27135.4 Da    PI: 6.8005
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538731.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.8e-081822152154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp++e++++L +++gL+ +q+ +WF N+R +
  KN538731.1_FGP005 182 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 215
                        569*****************************87 PP
2ELK29.81.3e-10136157122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELKh+L+++Y+++L+++++E++
  KN538731.1_FGP005 136 ELKHELKQGYREKLVDIREEIL 157
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012566.8E-142174IPR005541KNOX2
PfamPF037912.9E-113573IPR005541KNOX2
SMARTSM011880.0014136157IPR005539ELK domain
PROSITE profilePS5121310.196136156IPR005539ELK domain
PfamPF037892.0E-6136157IPR005539ELK domain
PROSITE profilePS5007111.596156219IPR001356Homeobox domain
SMARTSM003893.3E-10158223IPR001356Homeobox domain
SuperFamilySSF466898.98E-16158223IPR009057Homeodomain-like
CDDcd000861.25E-11159220No hitNo description
Gene3DG3DSA:1.10.10.601.5E-24163220IPR009057Homeodomain-like
PfamPF059202.2E-18176215IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAFHYQDHAL AMDAAAAAAE TGGHHHPGHF VYQTHYVLLL CSFKEQLQQH VRVHAMEAVM  60
ACWELEQTLQ SLTVVTLTAG ASPGEGSGAT MSDDEDNQVD SESNMFDGND GSDGMGFGPL  120
MLTEGERSLV ERVRQELKHE LKQGYREKLV DIREEILRKR RAGKLPGDTA STLKAWWQAH  180
SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PASSSSDKSK RKRYRVVDF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212232RKRNWHSNPASSSSDKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538731.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076280.0AB007628.2 Oryza sativa Japonica Group HOS59 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656302.11e-133PREDICTED: homeobox protein knotted-1-like 11 isoform X2
RefseqXP_006656303.11e-133PREDICTED: homeobox protein knotted-1-like 11 isoform X3
RefseqXP_015693734.11e-133PREDICTED: homeobox protein knotted-1-like 11 isoform X1
SwissprotQ94LW41e-131KNOSB_ORYSJ; Homeobox protein knotted-1-like 11
TrEMBLB9FQ741e-143B9FQ74_ORYSJ; Uncharacterized protein
STRINGOBART06G22760.11e-135(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-109KNOTTED1-like homeobox gene 3