PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538733.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 961aa    MW: 108023 Da    PI: 6.0566
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538733.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.82.7e-55201363118
               CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        ke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een +
  KN538733.1_FGP009  20 KEaQRRWLRPTEICEILKNYRSFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENIN 111
                        55599*************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                        fqrr+yw+Lee++ +ivlvhylevk
  KN538733.1_FGP009 112 FQRRSYWMLEEDYMHIVLVHYLEVK 136
                        **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.60615141IPR005559CG-1 DNA-binding domain
SMARTSM010765.2E-7618136IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-4821135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.7E-7372457IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.43E-17374459IPR014756Immunoglobulin E-set
PfamPF018335.1E-8374449IPR002909IPT domain
CDDcd001020.00319374461No hitNo description
SuperFamilySSF484039.64E-17563667IPR020683Ankyrin repeat-containing domain
CDDcd002041.92E-13566664No hitNo description
Gene3DG3DSA:1.25.40.205.6E-18566671IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.059572676IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.763572604IPR002110Ankyrin repeat
SMARTSM002480.013605634IPR002110Ankyrin repeat
PROSITE profilePS500888.843605637IPR002110Ankyrin repeat
SMARTSM002481400644673IPR002110Ankyrin repeat
SuperFamilySSF525404.51E-8776829IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.075778800IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407779808IPR000048IQ motif, EF-hand binding site
PfamPF006120.0031780799IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022801823IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578802826IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4804823IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MAEGRRYAIA PQLDIEQILK EAQRRWLRPT EICEILKNYR SFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENI NFQRRSYWML  120
EEDYMHIVLV HYLEVKLKFH FLHIYGYDHQ AGKLSSRSTG HDDVLQASHA DSPLSQLPSQ  180
TTEGESSVSG QASEYDETES GSYQGLQATA PNTGFYSHGQ DNLPVVLNES DLGTAFNGPN  240
SQFDLSLWIE AMKPDKGTHQ IPLYQAPVPS EQSPFTGGPG IESFTFDEVY NNELSIKDVD  300
GDDTDGETPW QDSFKKNDSF TRWMSKELAE VDDSQITSSS GVYWNSEEAD NIIEASSSDQ  360
YTLGPVLAQD QLFTIVDFSP TWTYAGSKTR VFIKGNFLSS DEVKRLKWSC MFGEFEVPAE  420
IIADDTLVCH SPSHKPGRVP FYVTCSNRLA CSEVREFDFR PQYMDAPSPL GSTNKIYLQK  480
RLDKLLSLEQ DEIQTTLSNP TKEIIDLSKK ISSLMMNNDD WSELLKLADD NEPATDDKQD  540
QFLQNRIKEK LHIWLLHKVG DGGKGPSVLD EEGQGVLHLA AALGYDWAIR PTIAAGVNIN  600
FRDAHGWTAL HWAAFCGRER TVVALIALGA APGAVTDPTP SFPSGSTPAD LASANGHKGI  660
SGFLAESSLT SHLQTLNLKE AMRSSAGEIS GLPGIVNVAD RSASPLAVEG HQTGSMGDSL  720
GAVRNAAQAA ARIYQVFRMQ SFQRKQAVQY EDENGAISDE RAMSLLSAKP SKPAQLDPLH  780
AAATRIQNKF RGWKGRKEFL LIRQRIVKIQ AHVRGHQVRK HYRKIIWSVG IVEKVILRWR  840
RRGAGLRGFR PTENAVTEST SSSSGNVTQN RPAENDYDFL QEGRKQTEER LQKALARVKS  900
MVQYPDARDQ YQRILTVVTK MQESQAMQEK MLEESTEMDE GLLMSEFKEL WDDDMPTPGY  960
F
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538733.1_FGP009
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666510.0AK066651.1 Oryza sativa Japonica Group cDNA clone:J013074G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631248.10.0calmodulin-binding transcription activator 1 isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0E0G2780.0A0A0E0G278_ORYNI; Uncharacterized protein
STRINGORUFI03G06510.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]