PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538733.1_FGP021

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 174aa MW: 18782.4 Da PI: 4.0186

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538733.1_FGP021	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.9	1.4e-07	38	77	4	43
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 ++++ eq+++Le+ F +++++ ++++++A+ lgL+ rq KN538733.1_FGP021 38 KRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQ 77 4567789******************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.4E-6	30	78	IPR009057	Homeodomain-like
CDD	cd00086	4.71E-7	37	77	No hit	No description
Pfam	PF00046	7.1E-5	38	77	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-7	44	77	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MEQKDEAEMA EAEDDDEEEV DEDMAGVHAA SCGLGEKKRR LALEQVRALE RSFDTDNKLD 60 PDRKARIARD LGLQPRQASP YSGAAFIGFG PSFLVDDASA ATVGCSSSLP ALESRWHGPY 120 SDDSCKGGVY GFTEEWLAAC SGEMAGNDAA GFFSDEHASN LNFGWCASVN EGWE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538733.1_FGP021

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC121489	1e-155	AC121489.2 Oryza sativa Japonica Group chromosome 3 clone OJ1217B09, complete sequence.
GenBank	AK060119	1e-155	AK060119.1 Oryza sativa Japonica Group cDNA clone:006-308-F01, full insert sequence.
GenBank	AK101522	1e-155	AK101522.1 Oryza sativa Japonica Group cDNA clone:J033046N04, full insert sequence.
GenBank	AK105644	1e-155	AK105644.1 Oryza sativa Japonica Group cDNA clone:001-200-F05, full insert sequence.
GenBank	AP014959	1e-155	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CT831039	1e-155	CT831039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023E12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628283.1	7e-64	homeobox-leucine zipper protein HOX13 isoform X1
Swissprot	A2XDD6	7e-65	HOX13_ORYSI; Homeobox-leucine zipper protein HOX13
Swissprot	Q10QP3	6e-65	HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13
TrEMBL	A0A0D3FET4	6e-87	A0A0D3FET4_9ORYZ; Uncharacterized protein
STRING	OGLUM03G06560.1	3e-63	(Oryza glumipatula)
STRING	ORUFI03G06390.1	3e-63	(Oryza rufipogon)
STRING	OS03T0188900-01	3e-63	(Oryza sativa)
STRING	ONIVA02G06360.1	3e-63	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	1e-16	homeobox protein 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]