PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538733.1_FGP096
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 298aa    MW: 32209.4 Da    PI: 8.3085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538733.1_FGP096genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.3e-15110161155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P +   +s++ + a+i+  A++Y+k+L+
  KN538733.1_FGP096 110 QRMTHIAVERNRRRQMNEYLAVLRSLMPAS---YSQRGDQASIVGGAINYVKELE 161
                        79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.00E-15108165No hitNo description
PROSITE profilePS5088815.967109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14110165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-17110175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-12110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MALEAVVFPQ GHFGYGCGRD SPAYGMPWCD VLAAAGGGGG GFGEFYGVDE WDDQLQVASV  60
DEWEVASKDN SDASTEGKAA AAERAAPVAA GRRKRRRTKV VKNKEEIECQ RMTHIAVERN  120
RRRQMNEYLA VLRSLMPASY SQRGDQASIV GGAINYVKEL EQLLQSLEVQ KSLKNRSGAM  180
DAAGDSPFAG FFSFPQYSTS PRSGCSAAAS AGSSGRHASL KVLARRRPKQ LLKLVVGLQQ  240
LRIPPLHLNV TTVDTMVLYS FSLKVEDDSK LGSVEDIATA VHQILGSIQQ QEAVLSIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19296RKRRR
29297RKRRRT
3110121RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538733.1_FGP096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075550.0AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence.
GenBankHQ8588660.0HQ858866.1 Oryza sativa Japonica Group isolate UT1675 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629273.10.0transcription factor bHLH96
SwissprotQ9C7T45e-79BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D3FET20.0A0A0D3FET2_9ORYZ; Uncharacterized protein
TrEMBLI1P8D00.0I1P8D0_ORYGL; Uncharacterized protein
TrEMBLQ8H7N80.0Q8H7N8_ORYSJ; BHLH transcription factor
STRINGOS03T0188400-010.0(Oryza sativa)
STRINGORGLA03G0062600.10.0(Oryza glaberrima)
STRINGOBART03G06470.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]