PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538735.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 259aa    MW: 28308.2 Da    PI: 10.2645
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538735.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.71.2e-15185210126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +ktelC+ + +tG C+yGd+C+FaHg
  KN538735.1_FGP007 185 FKTELCNKWEETGDCPYGDQCQFAHG 210
                        79***********************9 PP
2zf-CCCH19.32e-06223248126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ykt+ Cr  +++  C+yG rC+F H+
  KN538735.1_FGP007 223 YKTAVCRMVLAGDVCPYGHRCHFRHS 248
                        9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.7E-19179217IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-10181216IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413184212IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-12185210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-8218250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-11218248IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5222249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009222250IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MATGEHKSIL PASPNGKSTH LKVHPVRLAV AAAGRKETHL AHAPTYAAAL RRENAELRVT  60
NSDLARRLAL LSGKHTAAVA VADEIRRLRL GEQKVAADTK ERTPEKLAVL PKSISVRSTS  120
YLKLNQQSQA ATATPAAPNR KPRTSSNPTN PPSSRAYDGG KKGDEQKAQP ADSGAELEVY  180
NQGMFKTELC NKWEETGDCP YGDQCQFAHG VAELRPVIRH PRYKTAVCRM VLAGDVCPYG  240
HRCHFRHSLT PAERLLLRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21185248467Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538735.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086580.0AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631647.11e-137zinc finger CCCH domain-containing protein 9 isoform X2
SwissprotA2ZVY51e-136C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A0E0C6811e-137A0A0E0C681_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0JLQ71e-137A0A0E0JLQ7_ORYPU; Uncharacterized protein
STRINGOMERI01G23770.11e-137(Oryza meridionalis)
STRINGOPUNC01G24490.11e-137(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-49C3H family protein