PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538737.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 757aa    MW: 83296.4 Da    PI: 6.7373
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538737.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3634.9e-20129238198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE...........EEETTEEEE-TTHHHHHHHHT--T CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy.........rkksgryvltkGWkeFvkangLke 76 
                        f+k+lt sd++++g +++ +++aee+       ++++ +  +l+ +d++g++W +++i+          ++++r++lt+GW+ Fv++++L +
  KN538737.1_FGP003 129 FCKTLTASDTSTHGGFSVLRRHAEEClppldmtQNPPWQ--ELVARDLHGNEWHFRHIFrgsphhsliLGQPRRHLLTTGWSVFVSSKRLVA 218
                        99****************************986555545..8*****************888888888788888****************** PP

                        T-EEEEEE-SSSEE..EEEEE- CS
                 B3  77 gDfvvFkldgrsefelvvkvfr 98 
                        gD ++F   + +++el+v+v+r
  KN538737.1_FGP003 219 GDAFIFL--RGENGELRVGVRR 238
                        *******..449999*****97 PP
2Auxin_resp111.21.1e-36264346183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+st++ F+v+Y+Pr+s+seFvv+++k+++a ++k+svGmRfkm+fe+++++err+sGt++gv  ++++ W nS WrsLk
  KN538737.1_FGP003 264 ASHAISTGTLFSVFYKPRTSQSEFVVSANKYLEAKNSKISVGMRFKMRFEGDEAPERRFSGTIIGVGSMSTSPWANSDWRSLK 346
                        789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-42118267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-39124253IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-19127238No hitNo description
SMARTSM010198.8E-18129240IPR003340B3 DNA binding domain
PROSITE profilePS5086310.828129240IPR003340B3 DNA binding domain
PfamPF023621.3E-17129238IPR003340B3 DNA binding domain
PfamPF065072.2E-34264346IPR010525Auxin response factor
PfamPF023091.2E-5545594IPR033389AUX/IAA domain
PROSITE profilePS5174519.289558643IPR000270PB1 domain
SuperFamilySSF542771.7E-9560629No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MAGSVVAAAA AAGGGGTGSS CDALYRELWH ACAGPLVTVP RQGELVYYFP QGHMEQLEAS  60
TDQQLDQHLP LFNLPSKILC KVVNVELRAE TDSDEVYAQI MLQPEADQNE LTSPKPEPHE  120
PEKCNVHSFC KTLTASDTST HGGFSVLRRH AEECLPPLDM TQNPPWQELV ARDLHGNEWH  180
FRHIFRGSPH HSLILGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM  240
RQLNNMSSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS ANKYLEAKNS  300
KISVGMRFKM RFEGDEAPER RFSGTIIGVG SMSTSPWANS DWRSLKVQWD EPSVVPRPDR  360
VSPWELEPLA ASNSQPSPQP PARNKRARPP ASNSIAPELP PVFGLWKSSA ESTQGFSFSG  420
LQRTQELYPS SPNPIFSTSL NVGFSTKNEP SALSNKHFYW PMRETRADSY SASISKVPSE  480
KKQEPSSAGC RLFGIEISSA VEATSPLAAV SGVGQNQPAA SVDAESDQLS QPSHANKSDA  540
PAASSEPSPH ETQSRQVRSC TKVIMQGMAV GRAVDLTRLH GYDDLRCKLE EMFDIQGELS  600
ASLKKWKVVY TDDEDDMMLV GDDPWPLMRW TLTTLLQCLI PLSRVLVNAA LLILYIQRAV  660
LFNGLCFQIH WINAGGFGGW KEGYSTKRAS GVCREPVVDA IDVEGPQGID MLAIALRKHS  720
LNVAQGSNLE ALPFITELVI EILVVQTQRK TYIEVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.063691355Auxin response factor 1
4ldw_A0.063691355Auxin response factor 1
4ldw_B0.063691355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538737.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0700260.0AK070026.1 Oryza sativa Japonica Group cDNA clone:J023036G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625501.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLI1P1B10.0I1P1B1_ORYGL; Auxin response factor
STRINGORGLA02G0176700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]