PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538737.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 198aa    MW: 22616.4 Da    PI: 4.6794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538737.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-101241631054
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++RR+riN+++  L+el+P+      +K++ +++Le+A++Y+k L
  KN538737.1_FGP012 124 KKRRQRINERLRILQELIPNG-----TKVDISTMLEEAIQYVKFL 163
                        8******************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.469114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-13118178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11120174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.07E-11123168No hitNo description
PfamPF000107.6E-8124163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MECSSFEAIC NESEMIAHLQ SLFWSSSDAD PCFGSSSFSL ISSEGYDTMT TEFVNSSTNV  60
CFDYQDDSFF SAVETTIGNK RKVQMDTENE LMMNRSKEVC TKLSVSKACK HSVSAENSQS  120
YYAKKRRQRI NERLRILQEL IPNGTKVDIS TMLEEAIQYV KFLHLQIKLL SSDEMWMYAP  180
LAFDSGNNRL YQNSLSQE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538737.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317591e-158AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-158AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-158CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619477.21e-131transcription factor SPATULA isoform X1
TrEMBLA2ZKY01e-132A2ZKY0_ORYSI; Uncharacterized protein
STRINGORUFI12G14590.11e-132(Oryza rufipogon)
STRINGONIVA12G13790.11e-132(Oryza nivara)
STRINGORGLA12G0196200.11e-132(Oryza glaberrima)
STRINGOBART12G13380.11e-132(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145082123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-36bHLH family protein