PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538738.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 154aa    MW: 16978.2 Da    PI: 8.4252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538738.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.73.5e-11100122123
                        ---SS-EEEEEEE--TT-SS-EE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                        ldDg++WrKYG+K vk+s++pr+
  KN538738.1_FGP004 100 LDDGFKWRKYGKKAVKNSPNPRK 122
                        59********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-1188128IPR003657WRKY domain
SuperFamilySSF1182903.79E-992123IPR003657WRKY domain
PROSITE profilePS5081113.44895131IPR003657WRKY domain
SMARTSM007742.3E-4100137IPR003657WRKY domain
PfamPF031061.7E-7101128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAASVGLNPE AFLISNSYSY SSSPFMASYT PELSAAAIDA DLFSGELDFD CSLPAPAFAG  60
AGEEYPENEN TMLRYESEEK MRGRVNGRIG FRTRSEVEIL DDGFKWRKYG KKAVKNSPNP  120
RKRLRMAMGH GRVVGRTAME FSMLVFARAI AGQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125PRKRLRM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538738.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0662521e-130AK066252.1 Oryza sativa Japonica Group cDNA clone:J013052M10, full insert sequence.
GenBankCT8328021e-130CT832802.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033C24, full insert sequence.
GenBankCU4062161e-130CU406216.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D08, full insert sequence.
GenBankCU4062181e-130CU406218.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D09, full insert sequence.
GenBankDQ8404151e-130DQ840415.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 16 (WRKY16) mRNA, partial cds.
GenBankHQ8588751e-130HQ858875.1 Oryza sativa Japonica Group isolate UT1752 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638018.15e-62probable WRKY transcription factor 50
TrEMBLA0A0E0DMW69e-68A0A0E0DMW6_9ORYZ; Uncharacterized protein
STRINGOMERI05G05120.11e-68(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-18WRKY DNA-binding protein 50