PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538739.1_FGP019
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 893aa    MW: 100208 Da    PI: 5.3223
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538739.1_FGP019genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.65.3e-191132421128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                        lp+G++F+Ptd +l+  +L+++v + +      ++++  ik+vd      +++P+d+p  ++++    yfF+k+ k+ ++  ++++ ++   
  KN538739.1_FGP019 113 LPRGVEFNPTDGDLL-WHLAAEVGNGQarrhpfINMF--IKSVDetigFGYTHPQDIP-GIRQDGCASYFFHKNFKECTN--ENSKCIR--- 195
                        699************.789999988886775553332..44443333399********.666777789******999876..3444445... PP

                NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        W+++g+  +++  +g+l g+k+++v+y  + + ++++ tdW +h+y++
  KN538739.1_FGP019 196 WQKSGNRISITL-DGNLQGCKEVFVLYayETDGNNPQITDWRLHQYHI 242
                        ************.999**********97767888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-24105260IPR003441NAC domain
PROSITE profilePS5100521.181113260IPR003441NAC domain
PfamPF023652.9E-8114242IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MVWTHVSATA SGVGPWDDGD SGSQIGGHWA RETRRGMRGP ERDVARQRSN FAGTTTRGDR  60
RKQRRAGERM VRFVVERRGG WLGVDWVWRE ASAAATAAAE DSGGAAQQGW PGLPRGVEFN  120
PTDGDLLWHL AAEVGNGQAR RHPFINMFIK SVDETIGFGY THPQDIPGIR QDGCASYFFH  180
KNFKECTNEN SKCIRWQKSG NRISITLDGN LQGCKEVFVL YAYETDGNNP QITDWRLHQY  240
HIESTEKDEG ELVVSKIFYE LEKNQFKWAE KSHAQSAQGA SAIDDDSKEE LQLDNVESNM  300
HIGNQINDHD EIEELDHMSL QERYRILMAE KHSSSAVVSS EQCVIDGLEN SCKPGTNGMI  360
PKRIHEGTAF RDGMYSMLQE ISSAPAIIGS IDNDNNRRLL TEGLSNNQQS HEAECESGFL  420
STSSSAAPPQ CQVVCSHDLL VNGKTLIYSR DPSSSSTPTF GDENIQLEGT DDRTLLVDVK  480
LEPALEGDFT EKITSSVQRS DPNHGTEGSN LVGSINSVSS AISKRIPEAA RSNPENSHVE  540
GLLPSSRIKS EVTGSELPLV VCGLTSISIA ELTAKKTTTL NHDGVLAYCS RKRKRRKTLR  600
DPSEKTLEED SLRNDEGTAY FSRQRRRRKT ATDSIETALE EDAPGLLQIL LDKGILVKEI  660
KLYGVEEDDD MVPDCTESDF QDLENVITKL FPQRTSLLKS ALRHEKGEKA IYCLTCLISL  720
IEQSRYLQFR DCPVEWGWCR DLQSFIFIFK SHNRIVLERP EYGYATYFFE IVKSLPIQWQ  780
IQRMVTAMKL SGCGRTALIE NRPLLIGEDL TEGEARVLEE YGWVPNSGLG TMLNYRDRVV  840
HDRWNERSGT DWKTKIGKLL MNGYSEGHLV LSHFPTKVGK IEDDTEIKQE DPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1590595RKRKRR
2590596RKRKRRK
3591596KRKRRK
4612625RNDEGTAYFSRQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538739.1_FGP019
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1052830.0AK105283.1 Oryza sativa Japonica Group cDNA clone:001-116-E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632079.10.0uncharacterized protein LOC4332096
TrEMBLA0A0E0HJW10.0A0A0E0HJW1_ORYNI; Uncharacterized protein
STRINGONIVA06G00900.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-38NAC family protein