PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538740.1_FGP013

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 121aa MW: 13192.9 Da PI: 8.8629

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538740.1_FGP013	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.2	2.8e-08	7	26	38	57
TS-HHHHHHHHHHHHHHHHC CS Homeobox 38 gLterqVkvWFqNrRakekk 57 +++ ++V++WFqN++a+e++ KN538740.1_FGP013 7 RIEGKNVFYWFQNHKARERQ 26 5899**************97 PP
2	Wus_type_Homeobox	53	8.2e-18	1	28	38	65
Wus_type_Homeobox 38 eLeeyGkiedkNVfyWFQNrkaRerqkq 65 +L++yG+ie+kNVfyWFQN+kaRerqk+ KN538740.1_FGP013 1 MLRQYGRIEGKNVFYWFQNHKARERQKK 28 59************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	8.9E-6	7	26	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MLRQYGRIEG KNVFYWFQNH KARERQKKRL TTLDVTTTTA AAAADADASH LAVLSLSPTA 60 AGAAAPSFPG FYVGNGGAVQ TDHTNWDCTA MATEKTFLQG PYDRAVLPSC HDANCLMRRT 120 V

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269\|PubMed:25697101, ECO:0000269\|PubMed:25841039, ECO:0000269\|PubMed:27194802}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538740.1_FGP013

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB218894	1e-129	AB218894.1 Oryza sativa Japonica Group mRNA for OsWUS protein, complete cds.
GenBank	AM234746	1e-129	AM234746.1 Oryza sativa mRNA for WUS protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006653851.1	2e-45	PREDICTED: WUSCHEL-related homeobox 1B-like
Swissprot	Q7XM13	3e-45	WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBL	S5CT48	2e-66	S5CT48_ORYLO; WUS (Fragment)
STRING	OPUNC04G26040.1	2e-48	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12465	31	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	2e-13	WOX family protein

Publications ? help Back to Top
Lu Z, et al. MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation. J Genet Genomics, 2015. 42(2): p. 71-8 [PMID:25697101] Tanaka W, et al. Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1. Plant Cell, 2015. 27(4): p. 1173-84 [PMID:25841039] Mjomba FM, et al. Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice. G3 (Bethesda), 2016. 6(7): p. 2013-21 [PMID:27194802]