PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538740.1_FGP051

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 233aa MW: 25661.1 Da PI: 6.1415

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538740.1_FGP051	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.8e-33	50	104	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQkYR+ KN538740.1_FGP051 50 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRI 104 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.662	47	107	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-18	48	104	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-30	49	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	50	105	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-9	54	103	IPR001005	SANT/Myb domain
Pfam	PF14379	8.9E-23	135	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MKVAAKPILP VMEAQNQMEN QLTRNCIGAA TPVTPTGNLA GSAGAGAPSK TRIRWTQDLH 60 ERFVDCVNQL GGADKATPKG ILKLMNSDGL TIYHIKSHLQ KYRIAKYMPA SSEGKQLEKR 120 ATGNDMQNLD PKTGMQITEA LRVQLDVQRR LHEQLEIQRN LQLRIEEQGK RLQKMFEDQL 180 KASRSVVEPQ EVDDVVAFAA GDGEDDAFDD VDVQLLAVAG SGYDDAGFQS KIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-24	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-24	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-24	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-24	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538740.1_FGP051

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101951	0.0	AK101951.1 Oryza sativa Japonica Group cDNA clone:J033075I07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636269.1	1e-144	uncharacterized protein LOC4337318 isoform X1
Refseq	XP_015636270.1	1e-144	uncharacterized protein LOC4337318 isoform X1
Refseq	XP_015636271.1	1e-144	uncharacterized protein LOC4337318 isoform X1
Refseq	XP_015636272.1	1e-144	uncharacterized protein LOC4337318 isoform X1
Refseq	XP_025880593.1	1e-144	uncharacterized protein LOC4337318 isoform X1
Swissprot	Q0WVU3	1e-68	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A0E0DJR1	1e-148	A0A0E0DJR1_9ORYZ; Uncharacterized protein
STRING	OMERI04G23830.1	1e-149	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6933	37	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	5e-70	G2-like family protein