PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538740.1_FGP057
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 398aa    MW: 42065 Da    PI: 6.5027
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538740.1_FGP057genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-08194219227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt+ C  +     Ck+Gd+C+FaHg+
  KN538740.1_FGP057 194 KTRMCTKYNTAEGCKFGDKCHFAHGE 219
                        9***********************96 PP
2zf-CCCH37.63.6e-12365390127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC +f + GtC +GdrC+FaHg+
  KN538740.1_FGP057 365 YKTKLCENFVK-GTCTFGDRCHFAHGE 390
                        9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF055538.9E-15101135IPR008480Protein of unknown function DUF761, plant
PROSITE profilePS501036.981120154IPR000571Zinc finger, CCCH-type
PfamPF146081140151No hitNo description
SMARTSM003560.046192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892192220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-8193223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-13193224IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4194219IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.75E-14259334IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-14263333IPR004088K Homology domain, type 1
SMARTSM003228.9E-11263333IPR004087K Homology domain
PROSITE profilePS5008414.257264328IPR004088K Homology domain, type 1
PfamPF000132.3E-10266328IPR004088K Homology domain, type 1
CDDcd001051.10E-13266328No hitNo description
SuperFamilySSF902292.49E-9363394IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-15363394IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8364390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.488364391IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9365390IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAPLFHMEAL LPSSPKLNSI LHSHIYPQDL ELHYHPYYYD YDDSTWNVVV PADGAAEEPR  60
GGGGDDGEDC GYLCWLEEET SADALPAAGE GDDGDGNGAG NEIDRLAERF IARCHAKFLL  120
EKQESYRRYQ EMMARSITIG CPFGEGCHFS HFVPGGYQAV AKTLNLGNPA VPAPARAPMD  180
HAAGGNSHPA SSGKTRMCTK YNTAEGCKFG DKCHFAHGER ELGKPAYMSH ESAMAPPMGG  240
RYGGRPEPPP PAAMGPPAGN FGASATAKIS VDASLAGGII GKGGVNTKQI CRVTGVKLSI  300
RDHESDPNLK NIELEGNFDQ IKQASNMVGE LIATISASTP AKKPAGSAAG AAPAGRGGPG  360
GRSNYKTKLC ENFVKGTCTF GDRCHFAHGE NEQRKGAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538740.1_FGP057
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066460.0AL606646.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8550380.0CR855038.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H1005F08, complete sequence.
GenBankCT8338350.0CT833835.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636567.10.0zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK10.0C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A0E0DJR20.0A0A0E0DJR2_9ORYZ; Uncharacterized protein
STRINGONIVA04G27230.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-51C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]