PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538741.1_FGP015
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 286aa    MW: 30826.7 Da    PI: 5.2186
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538741.1_FGP015genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.21.4e-1166922652
            G2-like 26 kAtPktilelmkvkgLtlehvkSHLQk 52
                        AtPk++l++m v+gLtl+h+kSHLQ+
  KN538741.1_FGP015 66 GATPKSVLRAMAVPGLTLYHLKSHLQR 92
                       59************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-106592IPR009057Homeodomain-like
PfamPF143796.6E-15131171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAGPLLLTTT TTTTIYSLAH TPSQAGRSRK ASDAGEAADP EEIPRTGVGS GGSLEMSSQQ  60
QQQHAGATPK SVLRAMAVPG LTLYHLKSHL QRQPADHDGD SAADEPRTIA YDGDSDGDAK  120
EALRDSSRSM VQMQREVQRK LQEQIEVQRH LQLRMEAQGR YLQSVLRRAQ QVLADHSLAS  180
SPEAATAELS ELASAVEIEC MSSSSPPRRH RQSAATDSCV TTSSSEAESK AAGSKRLHTS  240
DCTVEQPVQG KRAFNFLQRH NQADQEEEEY AGAEDGSSSE IDLNSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538741.1_FGP015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703380.0AK070338.1 Oryza sativa Japonica Group cDNA clone:J023049D17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650853.11e-131myb-related protein 2
TrEMBLQ0J5H11e-145Q0J5H1_ORYSJ; Os08g0434700 protein (Fragment)
STRINGOS08T0434700-011e-146(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-28G2-like family protein