PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538742.1_FGP039
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 387aa    MW: 43176.2 Da    PI: 6.7857
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538742.1_FGP039genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.6e-5241311128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+v+yL +++++ k+++  +i+ev+iyk++PwdLp+k+  +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++
  KN538742.1_FGP039   4 LPPGFRFHPTDEELIVHYLMNQAASVKCPV-PIIAEVNIYKCNPWDLPAKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSI 94 
                        79****************************.88***************8877899************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ls+ ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl
  KN538742.1_FGP039  95 LSTpTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 131
                        *9988899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-632166IPR003441NAC domain
PROSITE profilePS5100558.8824166IPR003441NAC domain
PfamPF023652.7E-265131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MPALPPGFRF HPTDEELIVH YLMNQAASVK CPVPIIAEVN IYKCNPWDLP AKALFGENEW  60
YFFSPRDRKY PNGARPNRAA GSGYWKATGT DKSILSTPTS DNIGVKKALV FYKGKPPKGV  120
KTDWIMHEYR LTGTSANNTT TTTKQRRASS MTMRLDDWVL CRIHKKSNDF NSSDQHDQEP  180
EGSTVDEQLE DIHDNNSSSQ QPPAPPDMNN QRSDFQPMTA MMSMSKSCSL TDLLNNLDCA  240
ALSQFLLDGS SDAIAELPAP PSPLIYPNQT LNYNINNNMP HAFESRLDHH DGYVNNYNVN  300
GLRRKRMMAC SATSFDDGSS SSSDFVHVAK KPQLLPSDSR GSGFGGGYCN QQLSETATGF  360
QFQNGNMLSH PFPLNQQLLL NNHLQMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-73417215174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538742.1_FGP039
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004950.0BX000495.1 Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620532.10.0NAC transcription factor 29
TrEMBLA0A0D3HQU80.0A0A0D3HQU8_9ORYZ; Uncharacterized protein
STRINGOBART12G01290.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-81NAC domain containing protein 47