PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538742.1_FGP049
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 169aa    MW: 17915.5 Da    PI: 4.4831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538742.1_FGP049genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.7e-0692112323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C  Cgk Fs++ +L  H+r+H
  KN538742.1_FGP049  92 CRECGKLFSSRRSLFGHMRRH 112
                        ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-51335IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-51336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.17E-111335No hitNo description
PROSITE profilePS5015710.4081335IPR007087Zinc finger, C2H2
SMARTSM003550.111335IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576677.17E-1185112No hitNo description
PROSITE profilePS5015710.86690113IPR007087Zinc finger, C2H2
SMARTSM003550.01290112IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-591112IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-592112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDAGGVELSG VMHRCRVCGK GFSCGRSLGG HMRSHISFGE AAAELSSNGG VVGYGLRENP  60
KKTRRLSEFD GDGDGEEVEV EEGGDGGELR ACRECGKLFS SRRSLFGHMR RHASGGGGRD  120
HDDDDGDDDV DVEDEFGGAE EEEEVVAPAP APVVHMCYGV GYHVALVEN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538742.1_FGP049
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038400.0AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10.
GenBankAP0039150.0AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646241.15e-61uncharacterized protein LOC107278250
TrEMBLA0A0D3GT544e-61A0A0D3GT54_9ORYZ; Uncharacterized protein
STRINGOBART07G21080.16e-62(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-17C2H2-like zinc finger protein