PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538743.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 127aa    MW: 14028.9 Da    PI: 9.4062
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538743.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.7e-112283263
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                       +e +   rk +NR++A+rsR +K+++++ L+ ++++L  eN+a++  +    + +  +++e+
  KN538743.1_FGP013 22 EEERQRNRKRSNRLSAQRSRMKKQQYVDGLAVEAEQLRRENDAMRAAAGAVLQRCRLVEQEN 83
                       3444455888***********************************99988888777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.9E-101876No hitNo description
SMARTSM003381.2E-122085IPR004827Basic-leucine zipper domain
PfamPF001703.3E-82276IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7722386IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-92576No hitNo description
PROSITE patternPS0003602943IPR004827Basic-leucine zipper domain
CDDcd147024.71E-123277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MSVAPATEGS ARRSAAAAAE EEEERQRNRK RSNRLSAQRS RMKKQQYVDG LAVEAEQLRR  60
ENDAMRAAAG AVLQRCRLVE QENRVLAAHA RELCSALQLR ASQLRLLGEV AGVPLDVPDV  120
SVVYCLT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538743.1_FGP013
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1347690.0AC134769.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence.
GenBankAK1099290.0AK109929.1 Oryza sativa Japonica Group cDNA clone:002-151-H09, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631799.17e-64ocs element-binding factor 1
TrEMBLA0A0E0GLC24e-75A0A0E0GLC2_ORYNI; Uncharacterized protein
STRINGONIVA03G15500.16e-76(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125042837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.11e-08G-box binding factor 6