PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538743.1_FGP046
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 166aa    MW: 18447.8 Da    PI: 7.6855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538743.1_FGP046genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-0881101223
                        -S---SGGGGTS--TTTTT-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkF 23 
                        ktelC+ + r G C+yG+rC++
  KN538743.1_FGP046  81 KTELCNKWER-GACPYGARCRC 101
                        8*********.*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-874100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.33379100IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-581101IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAPPKPEEDE AAQGGAPKSI SIRSSGYLSQ KQPQGQARPQ RLRVRASQAM EEAAAAVDDD  60
EEEDKGGGEV EVEAYRQGAA KTELCNKWER GACPYGARCR CPGFALSRIP FREFGVMIEM  120
RNPFGCLRLH VCMASRPLHT CRLHIRKSAE KRLEEADRQC LDRGSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538743.1_FGP046
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186681e-105AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372671e-105AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAK2883011e-105AK288301.1 Oryza sativa Japonica Group cDNA, clone: J090020B20, full insert sequence.
GenBankAP0149591e-105AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-105CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880078.16e-42putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN82e-51C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A0E0GEB64e-50A0A0E0GEB6_ORYNI; Uncharacterized protein
TrEMBLI1PAI04e-50I1PAI0_ORYGL; Uncharacterized protein
STRINGONIVA02G38660.17e-51(Oryza nivara)
STRINGORGLA03G0137600.17e-51(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-08C3H family protein