PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538746.1_FGP031

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 399aa MW: 43790.6 Da PI: 6.8628

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538746.1_FGP031	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00057	286	319	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 i +++ L++++ + +K + a++L ++++YIk L KN538746.1_FGP031 286 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 319 667889999999987.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.947	270	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-9	285	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-8	285	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.22E-4	285	324	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MRLPAAGEHA HGHGWSHGEL SNSTTGGCYR ENFLDLLASK NVTPEMFEEV PAAEHYNVAP 60 AGTTLTTARS SFDHARSDVS PIKYEIAGSP LYLGGTNTVL QVQDMTMMSS TPACYGKHHH 120 HHHQLTKEGS CSHQQQEQHE LAISPMASFL QQISSGSASV GVHNSSLDYS GLGDQPDKIC 180 CQDGREMEAS PFSMRSLPDL GSFAGYTPAI ESTSVQPYMR CANSSDSNRQ EQETVQARSS 240 SSGSGAAATD RKKRKLEERQ ESTVKKSKQE ASKASPPKQP VPKVKIGEKI TALQQIVSPF 300 GKTDTASVLF ETIKYIKFLH EQVQLLSEPY TNSSRSNKQF QGNSVPWGDQ AEASKGETTE 360 HDLRNRGLCL VPVSWTPEVY RDGNAMDYWT PAYRGCLYR

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MRLPAAGEHA HGHGWSHGEL SNSTTGGCYR ENFLDLLASK NVTPEMFEEV PAAEHYNVAP  60
AGTTLTTARS SFDHARSDVS PIKYEIAGSP LYLGGTNTVL QVQDMTMMSS TPACYGKHHH  120
HHHQLTKEGS CSHQQQEQHE LAISPMASFL QQISSGSASV GVHNSSLDYS GLGDQPDKIC  180
CQDGREMEAS PFSMRSLPDL GSFAGYTPAI ESTSVQPYMR CANSSDSNRQ EQETVQARSS  240
SSGSGAAATD RKKRKLEERQ ESTVKKSKQE ASKASPPKQP VPKVKIGEKI TALQQIVSPF  300
GKTDTASVLF ETIKYIKFLH EQVQLLSEPY TNSSRSNKQF QGNSVPWGDQ AEASKGETTE  360
HDLRNRGLCL VPVSWTPEVY RDGNAMDYWT PAYRGCLYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538746.1_FGP031

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107063	0.0	AK107063.1 Oryza sativa Japonica Group cDNA clone:002-121-E03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623677.1	0.0	transcription factor bHLH110
TrEMBL	A0A0E0CPN0	0.0	A0A0E0CPN0_9ORYZ; Uncharacterized protein
STRING	OS02T0671300-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12698	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	2e-43	bHLH family protein