PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538748.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 100aa    MW: 10446 Da    PI: 10.6608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538748.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.4e-08242832
                       HHHHHHHHHHHHHHHHHCTSCCC.................. CS
                HLH  8 rErrRRdriNsafeeLrellPkas................k 32
                        Er+RR+++N++f  L+ +lP+ s                +
  KN538748.1_FGP005  2 SERKRREKLNDSFVALKAVLPTGSkclreqigdgaslvamS 42
                       6*********************5436666555555555550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.9E-6125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.797149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-6125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-7129No hitNo description
PfamPF000101.9E-5235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MSERKRREKL NDSFVALKAV LPTGSKCLRE QIGDGASLVA MSTSAGSGGR PPSANLTLQL  60
KLQPPGVSAK GAAEGAAVHQ LLADSAPFQP GKLISQFFFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127ERKRRE
238RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538748.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034174e-52AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149574e-52AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126094e-52CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.