PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538748.1_FGP013

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 26aa MW: 3017.6 Da PI: 10.7806

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538748.1_FGP013	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	4e-09	2	24	8	30
HHHHHHHHHHHHHHHHHCTSCCC CS HLH 8 rErrRRdriNsafeeLrellPka 30 Er+RR+++N++f L+ +lP++ KN538748.1_FGP013 2 SERKRREKLNDSFLALKAVLPPC 24 6********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.0E-7	1	24	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.24E-8	1	25	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.525	1	26	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	2	24	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 26 aa Download sequence Send to blast
MSERKRREKL NDSFLALKAV LPPCSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	7	ERKRRE
2	3	8	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538748.1_FGP013