PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538748.1_FGP015

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 374aa MW: 39869.6 Da PI: 9.206

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538748.1_FGP015	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	2e-06	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F r nL+ H r H KN538748.1_FGP015 77 YVCEICGKGFQRDQNLQLHRRGH 99 9********************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.37E-8	76	99	No hit	No description
PROSITE profile	PS50157	11.801	77	99	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.6E-6	77	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0069	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	44	119	149	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.4E-4	142	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.37E-8	149	174	No hit	No description
SMART	SM00355	150	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MMLKDLAEIQ QQQLLAAAAA AEENMSNLTS ASGDQASVSS HPAPPPAKKK RSLPGNPDPE 60 AEVIALSPRT LMATNRYVCE ICGKGFQRDQ NLQLHRRGHN LPWKLKQRNP KEVVRKKVYV 120 CPEAGCVHHD PARALGDLTG IKKHFSRKHG EKKWKCDKCS KRYAVHSDWK AHSKICGTRE 180 YRCDCGTLFS RRDSFITHRA FCDALAEESA RAVTAAAAVA GQQQHGGGML FSQGGGRGAA 240 LSRPSSHAHM APAAAASTHN SSSSAATTNA PPPPPTSNVS STCVGAGGYG LAFEASHFIA 300 ADESSRGARS DRDTGNGVAG AGNDGLTRDF LGLRAFSHGD IMSMAGFDPC MSTTSASSAA 360 PYDHHHHSNK PWHS

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MMLKDLAEIQ QQQLLAAAAA AEENMSNLTS ASGDQASVSS HPAPPPAKKK RSLPGNPDPE  60
AEVIALSPRT LMATNRYVCE ICGKGFQRDQ NLQLHRRGHN LPWKLKQRNP KEVVRKKVYV  120
CPEAGCVHHD PARALGDLTG IKKHFSRKHG EKKWKCDKCS KRYAVHSDWK AHSKICGTRE  180
YRCDCGTLFS RRDSFITHRA FCDALAEESA RAVTAAAAVA GQQQHGGGML FSQGGGRGAA  240
LSRPSSHAHM APAAAASTHN SSSSAATTNA PPPPPTSNVS STCVGAGGYG LAFEASHFIA  300
ADESSRGARS DRDTGNGVAG AGNDGLTRDF LGLRAFSHGD IMSMAGFDPC MSTTSASSAA  360
PYDHHHHSNK PWHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-34	150	211	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-34	150	211	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	116	KLKQRNPKEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538748.1_FGP015

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105663	0.0	AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622491.1	1e-160	protein indeterminate-domain 7
Swissprot	Q9LRW7	1e-114	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A0D3EKM2	1e-160	A0A0D3EKM2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9Y4H8	1e-159	A0A0D9Y4H8_9ORYZ; Uncharacterized protein
TrEMBL	I1NL36	1e-159	I1NL36_ORYGL; Uncharacterized protein
STRING	OGLUM01G06620.1	1e-160	(Oryza glumipatula)
STRING	ORGLA01G0057600.1	1e-160	(Oryza glaberrima)
STRING	OBART01G06050.1	1e-160	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-106	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]