PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538750.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 207aa    MW: 22174.5 Da    PI: 8.8409
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538750.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.52.4e-27156206252
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEE CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitY 52 
                        +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++t+
  KN538750.1_FGP006 156 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTW 206
                        8**********************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-28140206IPR003657WRKY domain
SuperFamilySSF1182903.92E-24148206IPR003657WRKY domain
PROSITE profilePS5081126.222150207IPR003657WRKY domain
SMARTSM007748.0E-26155207IPR003657WRKY domain
PfamPF031062.2E-20156205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MESFFFSQPG GVGVGVGGGG GGVVGAGGAD EIMPYSSITD YLQGLLDPSG LARHLDVACP  60
SSQDTAGTGG VAGEGVAQRA TPNSSASFSS SDGEAEGGKS SRRCKKGQAK AEEEDDKDEE  120
DGENSKKPNK PKKKAEKRQR QPRVAFLTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR  180
CTTPKCGVKK RVERSYQDPS TVITTWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-251482061068Probable WRKY transcription factor 4
2lex_A6e-251482061068Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538750.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087450.0AK108745.1 Oryza sativa Japonica Group cDNA clone:002-150-E09, full insert sequence.
GenBankAY3418560.0AY341856.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
GenBankHQ8588570.0HQ858857.1 Oryza sativa Japonica Group isolate UT1620 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626307.12e-95WRKY transcription factor 71
TrEMBLA0A0E0C4X24e-96A0A0E0C4X2_9ORYZ; Uncharacterized protein
STRINGOMERI01G20560.27e-97(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-37WRKY DNA-binding protein 71