PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538750.1_FGP045
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 245aa    MW: 26895.2 Da    PI: 6.8513
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538750.1_FGP045genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.73.6e-33271182102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++l
  KN538750.1_FGP045  27 FVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHL 109
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l +i r+k+
  KN538750.1_FGP045 110 LPRIVRRKK 118
                        ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.7E-3722116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5123116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.9E-3424116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-162750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-2927116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-166577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-167890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDGLHTELAL GLIGCCGGDG QQQQAPFVAK TYQMVCDPRT DALVRWGRDN NSFVVVDPAA  60
FSQLLLPCFF KHGNFSSFVR QLNTYGFRKV HPDRWEFAHE SFLRGQTHLL PRIVRRKKRG  120
EGGGGGGGAS CSFGGGAGEH QVAAAAASVG MSGEEEDAAE DVLAKEAALF EEVQRLRHEQ  180
TAIGEELARM SQRLQATERR PDQLMSFLTK LADDPNAVTG HLLEQAAERK RRRQHLPSHE  240
PTGTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-231711619129Heat shock factor protein 1
5d5v_B5e-231711619129Heat shock factor protein 1
5d5v_D5e-231711619129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228232RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538750.1_FGP045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694790.0AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636084.11e-175heat stress transcription factor C-1a
SwissprotQ6VBA41e-176HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLA0A0D3ERF21e-174A0A0D3ERF2_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YBX81e-174A0A0D9YBX8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0MZG91e-174A0A0E0MZG9_ORYRU; Uncharacterized protein
STRINGOGLUM01G27120.11e-175(Oryza glumipatula)
STRINGORUFI01G26140.11e-175(Oryza rufipogon)
STRINGOS01T0625300-011e-175(Oryza sativa)
STRINGOBART01G23320.11e-175(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.15e-58heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]