PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538751.1_FGP062
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 190aa    MW: 20788.8 Da    PI: 5.2346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538751.1_FGP062genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.4e-0916392347
                       -HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                       +W+ Ia++++ gRt++++k++w++ 
  KN538751.1_FGP062 16 RWSQIASHLP-GRTDNEIKNFWNSC 39
                       6*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.183144IPR017930Myb domain
SuperFamilySSF466891.64E-81548IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-121657IPR009057Homeodomain-like
CDDcd001671.14E-51637No hitNo description
PfamPF002491.3E-61639IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEVGWRAKGF EVWWCRWSQI ASHLPGRTDN EIKNFWNSCL KKKLRQRGLD PATHKPIAAT  60
AAAAATSSAS AVTQVDEDHK PHGAADGLAA NAKQSVFDPF PNLGYGESSS NSSNWTCAEV  120
SNVLDSEVLN WAAGAAAKAE PFADMEQQQH HGGYGGGEHQ VEDDATLEHK FSLPCHEQSL  180
AQFDFNLEYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538751.1_FGP062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1117101e-110AF111710.1 Oryza sativa subsp. indica putative dnaJ-like protein, putative myb-related protein, putative farnesyl pyrophosphate synthase, and hypothetical protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638185.11e-83myb-related protein Hv33
SwissprotP200271e-39MYB3_HORVU; Myb-related protein Hv33
TrEMBLI1PXK72e-92I1PXK7_ORYGL; Uncharacterized protein
STRINGORGLA05G0210500.14e-93(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-20myb domain protein 86