PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538752.1_FGP072
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 315aa    MW: 33900.9 Da    PI: 7.9287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538752.1_FGP072genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.7e-10121168455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  KN538752.1_FGP072 121 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 168
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-17115186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-10115172No hitNo description
PROSITE profilePS5088815.256117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-17118185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-7121168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MELGNTRDES SVSDPAPGGA EIPPKGASDG NARKRKASRK GKGKDSPMST SAAKEDSGGK  60
RCKSTEESNA AAEENSGKGK AAQSNSENGG KKQGKDSSSK PPEPPKDYIH VRARRGEATD  120
SHSLAERVRR EKISQRMKLL QDLVPGCNKV VGKAVMLDEI INYVQSLQRQ VEFLSMKLAT  180
VNPQLDFNNL PNLLAKDMHQ SCSPLQSSHF PLETSGAPLP YINQPQQGNP LGCGLTNGMD  240
NQGSMHPLDP AFCRPMGSHH PFLNGVSDAA SQVGAFWQDD LQSVVQMDMG QSQEIATSSN  300
SYNGSLQTVH MKMEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538752.1_FGP072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621927.10.0transcription factor bHLH77 isoform X2
TrEMBLA0A0E0CC360.0A0A0E0CC36_9ORYZ; Uncharacterized protein
STRINGOMERI01G38110.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-57bHLH family protein