PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538753.1_FGP048
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 638aa    MW: 71379.3 Da    PI: 6.609
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538753.1_FGP048genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.93.9e-35377276
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                       Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  KN538753.1_FGP048  3 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 77
                       ************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114129.521177IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.3E-26264IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-33280IPR004333Transcription factor, SBP-box
PfamPF031104.7E-27377IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MKCQVPGCEA DIRELKGYHR RHRVCLRCAH AAAVMLDGVQ KRYCQQCGKF HILLDFDEDK  60
RSCRRKLERH NKRRRRKPDS KGILEKDVDD QLDFSADGSG DGELREENID VTTSETLETV  120
LSNKVLDRET PVGSDDVLSS PTCAQPSLQI DQSKSLVTFA ASVEACLGTK QENTKLTNSP  180
VHDTKSTYSS SCPTGRVSFK LYDWNPAEFP RRLRHQIFEW LSSMPVELEG YIRPGCTILT  240
VFVAMPQHMW DKLSEDTGNL VKSLVNAPNS LLLGKGAFFI HVNNMIFQVL KDGATLTSTR  300
LEVQSPRIHY VHPSWFEAGK PIDLILCGSS LDQPKFRSLV SFDGLYLKHD CRRILSHETF  360
DYIGSGEHIL DSQHEIFRIN ITTSKLDTHG PAFVEVENMF GLSNFVPILV GSKHLCSELE  420
QIHDALCGSS DISSDPCELR GLRQTAMSGF LIDIGWLIRK PSIDEFQNLL SLANIQRWIC  480
MMKFLIQNDF INVLEIIVNS LDNIIGSELL SNLEKGRLEN HVTEFLGYRQ VDTRWAGDYA  540
PNQPKLGISV PLAESTGTSG EHDLHSTNEA SGEEENMPLV TKALPHRQCC HPEISARWLN  600
AASIGAFPGG AMRMRLATTV VIGAVSRGAC RASKEVLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A6e-41282585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15977KRSCRRKLERHNKRRRRKP
26375RRKLERHNKRRRR
37077NKRRRRKP
47176KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538753.1_FGP048
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1000570.0AK100057.1 Oryza sativa Japonica Group cDNA clone:J013158B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640052.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLB9FPK10.0B9FPK1_ORYSJ; Uncharacterized protein
STRINGOGLUM05G17090.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-137squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]