PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538754.1_FGP029
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 216aa    MW: 23713.2 Da    PI: 6.868
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538754.1_FGP029genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like765.1e-242441355
            G2-like 13 rFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  KN538754.1_FGP029  2 AFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 44
                       6*****************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.715147IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-20245IPR009057Homeodomain-like
SuperFamilySSF466892.87E-8245IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-16246IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAFVHAVERL GGQERATPKL VLQMMNVRGL SIAHVKSHLQ MYRSKKLDHE SGHERGAISS  60
ESSRLYGLFQ RRQQAPMQTF DFKNCNSFSR NQEWAFNQQH AAARAAGAVN GHGPAKGLIH  120
EMIFRKEGKP TSHLFDVRDA IASTRFVTPT HNNGVVYAAE GKDESDRGDA PRDAGEDDGG  180
GGGGGGDQRQ DAGLAAEFEP ERGRSQISQQ EEEVLE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538754.1_FGP029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736061e-133AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641453.18e-75uncharacterized protein LOC4341235 isoform X1
TrEMBLA0A0D3GHK71e-73A0A0D3GHK7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0AAN39e-74A0A0E0AAN3_9ORYZ; Uncharacterized protein
STRINGOGLUM06G18870.11e-74(Oryza glumipatula)
STRINGOBART06G17710.12e-74(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-23G2-like family protein