PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538755.1_FGP040
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 322aa    MW: 34576.9 Da    PI: 8.7111
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538755.1_FGP040genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.5e-1365109347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  KN538755.1_FGP040  65 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 109
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.02458114IPR017930Myb domain
SuperFamilySSF466898.22E-1760114IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-1961113IPR006447Myb domain, plants
SMARTSM007172.6E-1162112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-1262108IPR009057Homeodomain-like
PfamPF002499.5E-1165109IPR001005SANT/Myb domain
CDDcd001673.63E-965110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MKKSASMSCI ASSLGGGGGS GGSSPAGTGR GGGGGGEGAA GYASDDPTHA SCSTNGRAER  60
KKGTPWTEEE HRMFLMGLQK LGKGDWRGIS RNFVVSRTPT QVASHAQKYF IRQTNSSRRK  120
RRSSLFDMVP EMPMDESPVV IEQLMLHSTQ DEATSSNQLP ISHLVKQKEP EFARHLSDLQ  180
LRKHEESEFT EPSLATLDLE MNHAAPFKTK SVLTMPTFYP ALIPVPLTLW PPNVANVGES  240
GTNHEILKPT PVNGKEVINK ADEVVGMSKL TIGDGSSNSI EPSALSLQLT GPTNTRQSAF  300
HVNPPMAGPD LNKRNNSPIH AV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538755.1_FGP040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716110.0AK071611.1 Oryza sativa Japonica Group cDNA clone:J023105I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621787.10.0transcription factor MYBS3-like
TrEMBLA0A0E0FHD20.0A0A0E0FHD2_ORYNI; Uncharacterized protein
TrEMBLA2WLJ10.0A2WLJ1_ORYSI; Uncharacterized protein
TrEMBLQ5SND90.0Q5SND9_ORYSJ; Os01g0187900 protein
STRINGOS01T0187900-010.0(Oryza sativa)
STRINGONIVA01G06510.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.14e-61MYB_related family protein