PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538756.1_FGP060
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 541aa    MW: 60370.3 Da    PI: 6.1341
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538756.1_FGP060genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.4e-093003371954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  KN538756.1_FGP060 300 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 337
                        665559******************************88 PP
2BELL118.23.7e-38163234172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        e+qelq+k akL+ +l+eVd++Yk+y++q+qtv+ssF++vag gsakpYt++Al++iS hFrcLkdai +qi
  KN538756.1_FGP060 163 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQTVVSSFDVVAGPGSAKPYTAVALQTISWHFRCLKDAINDQI 234
                        689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-5687232IPR006563POX domain
PfamPF075261.6E-5093230IPR006563POX domain
PROSITE profilePS5007112.325278341IPR001356Homeobox domain
SMARTSM003893.6E-9281345IPR001356Homeobox domain
CDDcd000868.94E-12281342No hitNo description
SuperFamilySSF466892.22E-17282347IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-28284347IPR009057Homeodomain-like
PfamPF059208.4E-18298337IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDGAQGSGSE LIHDDAHTGS QLEFGVLNNH NSSSVPSMQS QGLSLSLNTQ IMAPSLPYWS  60
IKPDMLTPQS YHDNLRGEDM RMKNLQSEAS RAIRNSRYLK AAQELLDEVV SVWKSIKQKA  120
QKEKVESGKA DGKETDGGPK SEGVSSNPQE SGANAAPELS TAEKQELQNK MAKLMAMLDE  180
VDRKYKHYYH QMQTVVSSFD VVAGPGSAKP YTAVALQTIS WHFRCLKDAI NDQINVIRKK  240
LGEEENSSGK EGKLTRLRYI DQQLRQQRAF QQYGMIPQNA WRPQRGLPEN SVTILRAWLF  300
EHFLHPYPKD SEKLMLARQT GLTRSQISNW FINARVRLWK PMIEDMYKEE IGDLEQDSNS  360
SSDNAPRSKD KMASSEDKED LKNSRARICE TSQLSESRTS IGAMNVGGAP VGFQNEPNPD  420
DSFMNLMLKD QRSNEADGGL LLHNTVAQHS DENARFMAYH LAELGRYGNG NVSLTLGLQH  480
SSSNLGVPNA QPGFPGVSED DIYNATAPLG VTVASSDYDS MNQMDQRQRF EHSPLLHDFV  540
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16287344562Homeobox protein Meis2
3k2a_B6e-16287344562Homeobox protein Meis2
4xrs_A5e-16287344158Homeobox protein Meis1
4xrs_B5e-16287344158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538756.1_FGP060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704650.0AK070465.1 Oryza sativa Japonica Group cDNA clone:J023054P21, full insert sequence.
GenBankAK1048720.0AK104872.1 Oryza sativa Japonica Group cDNA clone:001-044-C01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619822.10.0BEL1-like homeodomain protein 7
RefseqXP_015619823.10.0BEL1-like homeodomain protein 7
RefseqXP_025878002.10.0BEL1-like homeodomain protein 7
TrEMBLA0A0E0FEQ20.0A0A0E0FEQ2_9ORYZ; Uncharacterized protein
STRINGOMERI12G14810.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-112BEL1-like homeodomain 6