PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538758.1_FGP044
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1475aa    MW: 166648 Da    PI: 7.4231
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538758.1_FGP044genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.6e-22122220196
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F +++
  KN538758.1_FGP044 122 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRTS 212
                        99*****************************7556666.59************************************************877 PP

                        SSEE..EEEE CS
                 B3  87 rsefelvvkv 96 
                        rsef  vv+v
  KN538758.1_FGP044 213 RSEF--VVSV 220
                        7777..7765 PP
2Auxin_resp72.99.5e-252102781883
         Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                        r+s+seFvv+v+k+++a k+++svGmRfkm+fe+++++err+sGt++g+     ++ + W +S W+sLk
  KN538758.1_FGP044 210 RTSRSEFVVSVNKYLEAKKQNLSVGMRFKMRFEGDEAPERRFSGTIIGIGSvpaMSKSPWADSDWKSLK 278
                        789********************************************987522267889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-38106218IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-20120222No hitNo description
Gene3DG3DSA:2.40.330.102.5E-36120220IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-18122224IPR003340B3 DNA binding domain
PfamPF023622.5E-20122220IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251122224IPR003340B3 DNA binding domain
PfamPF065074.6E-22210278IPR010525Auxin response factor
SMARTSM011621.9E-19710775IPR013899Domain of unknown function DUF1771
PfamPF085903.8E-13711774IPR013899Domain of unknown function DUF1771
SMARTSM004631.2E-6779891IPR002625Smr domain
SuperFamilySSF1604433.92E-10780811IPR002625Smr domain
PROSITE profilePS5082822.225782893IPR002625Smr domain
PfamPF017131.5E-6782876IPR002625Smr domain
SuperFamilySSF1604433.92E-10843886IPR002625Smr domain
PfamPF043391.8E-1399651354IPR007434Peptidogalycan biosysnthesis/recognition
SuperFamilySSF557294.98E-2811411339IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.302.9E-1211421305IPR016181Acyl-CoA N-acyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1475 aa     Download sequence    Send to blast
MEMAANPGGS GTCSDALFRE LWHACAGPLV TVPKRGERVY YFPQGHMEQL EASTNQQLDQ  60
YLPMFNLPSK ILCSVVNVEL RAEADSDEVY AQIMLQPEAD QSEFTSLDPE LQDLEKCTAH  120
SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMSQNPPCQ ELVAKDLHGT EWHFRHIFRG  180
QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR TSRSEFVVSV NKYLEAKKQN LSVGMRFKMR  240
FEGDEAPERR FSGTIIGIGS VPAMSKSPWA DSDWKSLKVQ WDEPSAIVRP DRVSPWELEP  300
LDASNPQPPQ PPLRNKRARP PASPSVVAEL PPSFDVDSDQ ISQPSNGNKS DAPGTSSERS  360
PLESQSRQVR SCTKVRVCHV ISIFKMLKHT KNLIVFLVQL EEMFDIQGDL CPTLKIWQVV  420
YTDDEDDMML VGDDPWEKFQ CFFITASCAE DATLFYLELW WYLNCKCQEV PKTGKTAWKR  480
HSGNACRSKL FCVLDGWSSQ LHEPVDETDT ESLRHGKDAG TQHAWWRSKD GRGDDTDVNS  540
FPALSDYIAP NAASSSVAEN SRPKAKPFAS VLRPSVDCAA DGNENGNKHF TSHRENANCG  600
LKSASENKIE LLRGAHSWAD SNLIEDVLAS VNNDVGQASA LLKAMASPCF PIREDGLPDQ  660
LSSEINKTHG LPSGNGTAEN NLVNDSQLLP LPMNMSSVPI EPEVEELDDD YFNHRKDALK  720
IMRAAMKHSQ AASNAFLRGD HAAAKELSLR AQEERSAAEE LNKKAAEEIF RLRNSNNSIW  780
KLDMHGLHAS EAVEVLERHL HRIEFQPPGN NAALTDEVAR SEPTMSGPSI EPRPGKVVFV  840
RPRQAILEVI TGIGKHSKGQ ASLPVAVRGF LIEHGYRFDE LRPGHKLLTS QPEVKNHKGI  900
KGHSPSNLGF RRSGLQLKVT AIFGWIRGDT RTRELNPSAE SYTLTGSASE ADTKPREVSV  960
AVVSSIMDIP SADWDACAVD SVDPDNFNPF LTHAFLSSLE ESGSAVKETG WLPLHVVARD  1020
ENETVVGVVP LYLKSHSRGE FVFDQSWAEA YYSYGLEYYP KLQSCVPFTP VTGQRILVRD  1080
TPYRDQVFEA LVKELKSLTT KLKVSSLHIT FPSEGEFSKL KDSEFLQRIG MQYHWRNRDY  1140
RSFDEFLMDL KQPKRKNIRQ ERKKIPAQNL KMKRLRGDEI KSEHWDTFYK FYRNTTDNQF  1200
SPILHFLDYF LCAFSWGRPY LTREFFHRLG EKMGDKVMLI VAEHDDKHVA GALNLIGGDT  1260
LFGRLWGCLP DAYFPNLHFE ACYYQNIHTT QAIEAAIELN LSKVEAGAQG EHKIQRGYLP  1320
VTTYSCHYFL DPGFGAAIGN YLAHETAQVR SCHRRKERAR KKLSECHIDI SAKIPTKKDI  1380
RYCLIMLFVQ GYKDWFFLPP LINQRPRRTK LQCRKLSQTR AFASCSLPLH LDCTGCFIRQ  1440
AHHRLRKQPF DHLCSSSPRH RMAYTSRMNL KRKGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-13443038357Auxin response factor 1
4ldw_A1e-13443038357Auxin response factor 1
4ldw_B1e-13443038357Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538758.1_FGP044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671420.0AK067142.1 Oryza sativa Japonica Group cDNA clone:J013095E05, full insert sequence.
GenBankCT8296460.0CT829646.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ7XRI20.0Q7XRI2_ORYSJ; Auxin response factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.31e-143auxin response factor 1