PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538760.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 39aa    MW: 4540.06 Da    PI: 5.7589
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538760.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07332129
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIar 29
                       +g+W++eEd+l+++  +++G g +W + + 
  KN538760.1_FGP012  3 KGKWSKEEDDLIKNHMEKYGIGrSWQALSD 32
                       79******************9999988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.6139IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-8233IPR009057Homeodomain-like
SuperFamilySSF466896.21E-6234IPR009057Homeodomain-like
PfamPF002492.0E-5332IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 39 aa     Download sequence    Send to blast
MKKGKWSKEE DDLIKNHMEK YGIGRSWQAL SDALESENS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538760.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126183e-50CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BCC12e-15A0A0E0BCC1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IUR82e-15A0A0E0IUR8_ORYNI; Uncharacterized protein
TrEMBLJ3N3T89e-16J3N3T8_ORYBR; Uncharacterized protein
STRINGOGLUM10G14600.13e-16(Oryza glumipatula)
STRINGOB10G21860.12e-16(Oryza brachyantha)
STRINGONIVA10G16530.14e-16(Oryza nivara)