PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538761.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 66aa    MW: 7819.67 Da    PI: 8.9587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538761.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.63.6e-091135126
                AP2  1 sgykGVrwdkkrgrWvAeIrdpseng 26
                       ++y+GVr+++ +g+++AeIrdp  +g
  KN538761.1_FGP005 11 TKYRGVRRRP-WGKFAAEIRDPERGG 35
                       69********.**********73333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.2E-51138IPR001471AP2/ERF domain
PROSITE profilePS5103210.8761241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-101237IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-61238IPR016177DNA-binding domain
SMARTSM003800.00371253IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MEDDRSKDTA TKYRGVRRRP WGKFAAEIRD PERGGARRGR GDKIEFEYLD DKVLDDLLDD  60
EKYRGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538761.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0259072e-52AC025907.2 Oryza sativa Japonica Group cultivar japonica chromosome 10 clone nbxb0094K20, complete sequence.
GenBankAP0149662e-52AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-52CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614004.13e-17ethylene-responsive transcription factor ERF096-like
TrEMBLA0A0E0M8503e-16A0A0E0M850_ORYPU; Uncharacterized protein
STRINGOMERI07G10900.15e-17(Oryza meridionalis)
STRINGOPUNC10G09910.15e-17(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-11ERF family protein