PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538761.1_FGP048
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 201aa    MW: 22792 Da    PI: 6.1294
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538761.1_FGP048genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP58.51.1e-182633071
            E2F_TDP 30 vakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                       va+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  KN538761.1_FGP048  2 VADELVAEfadpnnnfaspdpdnpntpqfDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 63
                       89***************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.7E-9163IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.7E-15263IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.9E-27269IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-121964IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011387.6E-770149IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.05E-1870132No hitNo description
PfamPF087812.0E-1671132IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MVADELVAEF ADPNNNFASP DPDNPNTPQF DEKNIRRRVY DALNVLMAMD IISKDKKEIQ  60
WKGLPRTSMS DVEELKTEII GLKGRIDKKN AYLQELEDQF VGLQNLAQRN EQLYGSGNAP  120
SGGVALPFIL VQHWGSPAKN QMIRKPGLEM EVSAQPHLSI INHPKLRGQT ELDYQHRPLF  180
PVYLKGVSSM NIRGYYDLLM V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-212683493PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538761.1_FGP048
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2409890.0AK240989.1 Oryza sativa Japonica Group cDNA, clone: J065051E11, full insert sequence.
GenBankAK2878090.0AK287809.1 Oryza sativa Japonica Group cDNA, clone: J065179H06, full insert sequence.
GenBankAY2245510.0AY224551.1 Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614876.11e-89transcription factor-like protein DPB
SwissprotQ9FNY26e-64DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0E0BAZ11e-88A0A0E0BAZ1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0ISI91e-88A0A0E0ISI9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QZL81e-88A0A0E0QZL8_ORYRU; Uncharacterized protein
TrEMBLI1QUW92e-88I1QUW9_ORYGL; Uncharacterized protein
STRINGOGLUM10G11120.12e-89(Oryza glumipatula)
STRINGORUFI10G11860.12e-89(Oryza rufipogon)
STRINGONIVA10G10530.12e-89(Oryza nivara)
STRINGORGLA10G0100200.13e-89(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.22e-66Transcription factor DP