PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538763.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 181aa MW: 21139.9 Da PI: 8.8265

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538763.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	89.5	2.6e-28	38	126	1	84
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k ltpsdv+k++rlv+pk++ae++ g ++ l++ede g W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++ KN538763.1_FGP001 38 FEKPLTPSDVGKLNRLVIPKQHAERYfplgaGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFER 126 99**************************9666678899*********************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-39	32	127	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-29	35	127	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.92E-26	37	126	No hit	No description
SMART	SM01019	3.7E-17	38	138	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.675	38	153	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-25	38	126	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MAMNHSLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA 60 ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD 120 VVHFERKPYL LYGPLAADMD GEVSGNIKLK RRGELKRQAE SYAIMQCFHL LQSNRFTDYT 180 V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-45	33	126	3	95	B3 domain-containing transcription factor NGA1
5os9_B	1e-45	33	126	3	95	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538763.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC112209	0.0	AC112209.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence.
GenBank	AC134048	0.0	AC134048.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0076K20, complete sequence.
GenBank	AK070487	0.0	AK070487.1 Oryza sativa Japonica Group cDNA clone:J023049E11, full insert sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	CP012619	0.0	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615108.1	1e-89	B3 domain-containing protein Os11g0156000
Swissprot	Q53QI0	1e-90	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A0D3HIE5	3e-88	A0A0D3HIE5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0BFI2	3e-88	A0A0E0BFI2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0I4G0	3e-88	A0A0E0I4G0_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0R4F0	3e-88	A0A0E0R4F0_ORYRU; Uncharacterized protein
STRING	OGLUM11G03240.1	5e-89	(Oryza glumipatula)
STRING	ORUFI11G03500.1	5e-89	(Oryza rufipogon)
STRING	OS11T0156000-01	5e-89	(Oryza sativa)
STRING	ONIVA07G22860.1	5e-89	(Oryza nivara)
STRING	OBART11G03590.1	5e-89	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	6e-50	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]