PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538764.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 207aa    MW: 22511.1 Da    PI: 4.6439
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538764.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-0833612248
                       T...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 22 g...tWktIartmgkgRtlkqcksrwqkyl 48
                       g   +W++Ia++++ gRt++++k+ w+++l
  KN538764.1_FGP011 33 GavtRWSAIAARLP-GRTDNEIKNVWHTHL 61
                       45667*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6093361IPR017877Myb-like domain
SuperFamilySSF466898.97E-83468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-123662IPR009057Homeodomain-like
PfamPF002492.0E-63761IPR001005SANT/Myb domain
CDDcd001671.40E-53761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEMTYLVYRT INVMFQQCCA RVAYFKRCWD GGGAVTRWSA IAARLPGRTD NEIKNVWHTH  60
LKKRLEPKPS SGREAAAPKR KAAKKAAAVA VAIDVPTTVP VSPEQSLSTT TTSAATTEEY  120
SYSMASSADH NTTDSFTSEE EFQIDDSFWS ETLAMTVDST DSGMEMSGGD PLGAGGASPS  180
SSNDDDMDDF WLKLFIQAGG MQNLPQI
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538764.1_FGP011
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120560.0AK112056.1 Oryza sativa Japonica Group cDNA clone:001-110-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623124.11e-119transcription factor MYB30-like
SwissprotQ6K1S61e-120MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A0E0NHZ21e-118A0A0E0NHZ2_ORYRU; Uncharacterized protein
TrEMBLA2X7E41e-118A2X7E4_ORYSI; Uncharacterized protein
TrEMBLI1P2C81e-118I1P2C8_ORYGL; Uncharacterized protein
STRINGORUFI02G25970.11e-119(Oryza rufipogon)
STRINGOS02T0624300-011e-119(Oryza sativa)
STRINGORGLA02G0213400.11e-119(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.21e-15myb domain protein 15
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]