PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538767.1_FGP033
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 467aa    MW: 50965.1 Da    PI: 9.6982
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538767.1_FGP033genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.2e-122581155
                AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
                       s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  KN538767.1_FGP033 25 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 81
                       57*******************5444.2455536655.779999**************98 PP
2AP247.35e-15124175155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +   g +k  +lg+f t eeAa+a++ a+ k++g
  KN538767.1_FGP033 124 SIYRGVTRHHQHGRWQARIGSVA--G-NKDLYLGTFSTQEEAAEAYDIAAIKFRG 175
                        57****************88853..2.5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-92581IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-152590IPR016177DNA-binding domain
CDDcd000184.25E-172591No hitNo description
PROSITE profilePS5103217.4772689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-122690IPR001471AP2/ERF domain
SMARTSM003801.4E-212695IPR001471AP2/ERF domain
PRINTSPR003671.8E-62738IPR001471AP2/ERF domain
CDDcd000181.29E-22124185No hitNo description
PfamPF008474.2E-10124175IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-18124185IPR016177DNA-binding domain
PROSITE profilePS5103219.098125183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-18125184IPR001471AP2/ERF domain
SMARTSM003803.3E-33125189IPR001471AP2/ERF domain
PRINTSPR003671.8E-6165185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MATDAAAGVG DPARRTAETF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG  60
GYDKEEKAAR AYDLAALKYW GPTTTTNFPV ANYETELEEM KSMTRQEFVL SLRRKSSGFS  120
RGASIYRGVT RHHQHGRWQA RIGSVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT  180
NFDMSRYDVG SILNSDLPVG GGAATRASKF PSDPSLPLPS PAMPPSEKDY WSLLALHYHH  240
QQQQQQFPAS AFDTYGCSSG VNVDITMGTS SHSGSNSNSS SSSSAIWGTA AGAAMGRQQN  300
GGSSNRQSNS YSGNNIPYAA AAAMASGSAL YGGSTGSNGT WVASNTSTAP HFYNYFVWDG  360
AARDPDGRDE VLGMVPEIQE WHGRNGTVAY RPQCWAGPLL QKSPVTAAQQ SYSFRTKQPR  420
WPPGMKSIKE SSNQEVRKVL TYGFHDSRVS KHAKQANQNI VLTDTPT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538767.1_FGP033
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019590.0AK101959.1 Oryza sativa Japonica Group cDNA clone:J033075O07, full insert sequence.
GenBankHQ8588430.0HQ858843.1 Oryza sativa Japonica Group isolate UT1531 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641575.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0E0ACR50.0A0A0E0ACR5_9ORYZ; Uncharacterized protein
STRINGOGLUM06G24650.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-116AP2 family protein