PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538778.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 114aa    MW: 12109.8 Da    PI: 9.5042
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538778.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.87.6e-127898222
                       --SS-EEEEEEE--TT-SS-E CS
               WRKY  2 dDgynWrKYGqKevkgsefpr 22
                       dDgy+WrKYGqK++k+s++pr
  KN538778.1_FGP002 78 DDGYKWRKYGQKSIKNSPNPR 98
                       8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.4737298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-107498IPR003657WRKY domain
SuperFamilySSF1182909.42E-97698IPR003657WRKY domain
SMARTSM007742.3E-477112IPR003657WRKY domain
PfamPF031067.1E-87898IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MVNKLISTVY SGPTISDIES ALSFTAAGDH QLLADGHNFA ASSCSPVVFS PEKTLSKTME  60
NKYTLKMKSC GNNGGLADDG YKWRKYGQKS IKNSPNPRLP PMIVTILTAA AAAA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538778.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106251e-159AK110625.1 Oryza sativa Japonica Group cDNA clone:002-169-B02, full insert sequence.
GenBankAY3418421e-159AY341842.1 Oryza sativa (japonica cultivar-group) WRKY1 mRNA, complete cds.
GenBankAY8706051e-159AY870605.1 Oryza sativa (japonica cultivar-group) WRKY17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641374.12e-65probable WRKY transcription factor 49
SwissprotQ9FHR71e-18WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A0D3EZ843e-64A0A0D3EZ84_9ORYZ; Uncharacterized protein
STRINGOBART01G45510.15e-65(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.19e-21WRKY DNA-binding protein 49