PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538778.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 1050aa    MW: 114372 Da    PI: 6.5096
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538778.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.6e-29930982255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +rl+Wtp+LH+rFve+v++L G ++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  KN538778.1_FGP010 930 ARLVWTPQLHKRFVEVVAHL-GMKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 982
                        79******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF079906.2E-29226336IPR012940Nucleic acid binding NABP
PfamPF079901.9E-53330551IPR012940Nucleic acid binding NABP
PROSITE profilePS50303133.505532872IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.102.4E-139534875IPR011989Armadillo-like helical
SuperFamilySSF483711.09E-117534869IPR016024Armadillo-type fold
CDDcd079201.04E-169547868IPR033712Pumilio, RNA binding domain
SMARTSM000256.3E-5552587IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030211.58552587IPR001313Pumilio RNA-binding repeat
PfamPF008061.9E-6553586IPR001313Pumilio RNA-binding repeat
SMARTSM000256.9E-7588623IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030210.53588623IPR001313Pumilio RNA-binding repeat
PfamPF008061.3E-7591620IPR001313Pumilio RNA-binding repeat
SMARTSM000255.1E-6624659IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030210.414624659IPR001313Pumilio RNA-binding repeat
PfamPF008061.7E-4625655IPR001313Pumilio RNA-binding repeat
SMARTSM000251.8E-5660695IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.224660695IPR001313Pumilio RNA-binding repeat
PfamPF008066.1E-5669693IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030210.764696732IPR001313Pumilio RNA-binding repeat
SMARTSM000258.2E-6696732IPR001313Pumilio RNA-binding repeat
PfamPF008062.6E-8698730IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030212.164733768IPR001313Pumilio RNA-binding repeat
SMARTSM000251.7E-7733768IPR001313Pumilio RNA-binding repeat
PfamPF008061.2E-7734764IPR001313Pumilio RNA-binding repeat
PfamPF008061.5E-4769798IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.107769804IPR001313Pumilio RNA-binding repeat
SMARTSM000251.8E-5769804IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030210.6805846IPR001313Pumilio RNA-binding repeat
SMARTSM000253.0E-8811846IPR001313Pumilio RNA-binding repeat
PfamPF008061.1E-8813845IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503025.304847882IPR001313Pumilio RNA-binding repeat
Gene3DG3DSA:1.10.10.602.4E-29926987IPR009057Homeodomain-like
PROSITE profilePS5129411.54926985IPR017930Myb domain
SuperFamilySSF466893.58E-18927986IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-23930982IPR006447Myb domain, plants
PfamPF002491.7E-8932981IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1050 aa     Download sequence    Send to blast
MAMRGEPWRR QEGEQAQAEA DRELDLFRSG SAPPTVEGSM GALQAAAAAD VFLEDELRAD  60
PAYHSYYYSN GNINPRLPPP LLSKEDWRSA QRLRPGLGGI GDGRKPRGGG GGGGGGAGGM  120
GPGDGLIGMP GLEIGRQNSF SGIFQDDSYQ HDTDRHGANC NGTDLLSYSK VQHGLHRETG  180
AISGLHSDSK APCLPENQNE SSHSYASIIG SSLSRSASPD PELVRRVPSP CLPPIGVKLG  240
ATDKKNNVGS SSFNRSSPNI IESDDLVSAL SGMNLSSSRA MNGNTMDQSK LHQDVDDVRK  300
FLFDQYMDQT NGNQRHSYMK RSEQGHVKVP QEYSGASMNP SVMRSQINAG GFTSFDNSTV  360
GSGFASPRLG SRSPGGSLSS RQNLTGGSNL PNYVGIGSPT AASAHQMPVD PLYVQFLRAA  420
EIAALAANCE DPLMDRANLG GSYMDLFGPQ KAYLSPLLQS QKQYGYYGNL GVGLGYAGNS  480
LTSPILPSSP GGPGSPLRHG DRSMRYPSGM RNFGGSFGSW NSDLGGKMEA NLVPSLLEEF  540
KSNKSKSYEL SEIAGHVVEF SADQYGSRFI QQKLETASTE EKDMVFAEIM PQALTLMTDV  600
FGNYVVQKFF EHGSSAQIKE LADQLIGRVL ALSLQMYGCR VIQKAIEVVD LDQQTKMVAE  660
LDGQVMRCVR DQNGNHVIQK CIECIPQHAI QFIVSTFYGQ VVMLSTHPYG CRVIQRVLEH  720
CDDPKTQQIM MDEILQSVCL LATDQYGNYV VQHVLEHGKP HERSAIIEKL IGQIVQMSQQ  780
KFASNVIEKC LAFGNPVERQ VLIGEMLGSS NESEHLEVMM KDQFANYVVQ KVLETCDDQQ  840
REMILTRIKA HLNTLKKYTY GKHIVARVEK LVAAGENPSI MGEEAPEEYE LGGGEDERGT  900
GADEAESEGG AEGGNGNANN NANSSSSKRA RLVWTPQLHK RFVEVVAHLG MKNAVPKTIM  960
QLMNVEGLTR ENVASHLQKY RLYVKRMQGL SNEGPSPSDH IFASTPVPHA SLHDQVPSPY  1020
HPHPHHHSSY NNAAYAATVS SYHHYHHANH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gvo_A1e-1285318837341Pumilio homolog 2
3gvt_A1e-1285318837341Pumilio homolog 2
3gvt_B1e-1285318837341Pumilio homolog 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2. {ECO:0000269|PubMed:19682068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538778.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0677390.0AK067739.1 Oryza sativa Japonica Group cDNA clone:J013120L17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640652.10.0pumilio homolog 1
SwissprotQ9ZW070.0PUM1_ARATH; Pumilio homolog 1
TrEMBLA0A0E0CDJ10.0A0A0E0CDJ1_9ORYZ; Uncharacterized protein
TrEMBLB8A9X00.0B8A9X0_ORYSI; Uncharacterized protein
TrEMBLQ5JMD60.0Q5JMD6_ORYSJ; Os01g0971900 protein
STRINGOS01T0971900-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.29e-45G2-like family protein
Publications ? help Back to Top
  1. Tam PP, et al.
    The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization.
    BMC Plant Biol., 2010. 10: p. 44
    [PMID:20214804]
  2. Wang M,Ogé L,Perez-Garcia MD,Hamama L,Sakr S
    The PUF Protein Family: Overview on PUF RNA Targets, Biological Functions, and Post Transcriptional Regulation.
    Int J Mol Sci, 2018.
    [PMID:29385744]