PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538779.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 662aa MW: 73218.8 Da PI: 9.3264

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538779.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.3	1.5e-10	139	180	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++er +++++r+gCka l +k+++d+ w+v++ + eHnH+l+ KN538779.1_FGP003 139 KSERANSSSSRCGCKALLYLKRTDDDGWYVAEHRAEHNHALS 180 568999**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-8	139	180	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.013	368	404	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence Send to blast
MDNPEIERAT STPRGGIPST PPGAKITAIA IADEPPPAPA RSDRVLGKRA RKDIAEGCSP 60 SPTATRAMRA GVDDSMEMHT GEFASDGVDD PQQCTPRSVG LESDVGRAIP TRNDSGTGNS 120 LYAVERVINA CLLFRSPGKS ERANSSSSRC GCKALLYLKR TDDDGWYVAE HRAEHNHALS 180 DSCGEKINWP SHSRIDIHTK GLIRHLRDNN VSLGKVYAII ASFFGTVRDI PFNKRALRSL 240 SHQMARQQAD DDIQRYNLTG NKFLTQIFEN RKRWAKPYFA REFCAGQTST QRSECANHLL 300 KKLISKNAPM HLFVSQYSKL LADRDAQEDR EETRKSGMFY VTNTIGLAEF TVKHVRSDDL 360 ERWQKTLFKV TVIGEMARLT CECGMCEHMG LLCHHIIRVI IHLDGQRIPD GNLMKRWTTC 420 ARDVLPPHLA AYRSEAGSMQ SKTFRHNVLY MAALELVQQG DLTVENFHSA MEGIAELKRK 480 LASAQPRSVS TEGTNDNSLG QSDDTPAPGV PPTSEQSCMV SSAPTPTTVE QNSPARNGVP 540 IQPPEPRRRR DRPTNSRLKH PADKPKRVAR TRFCKKCNKP GHNSATCVDG ERNHEAMAFG 600 ALHVEASKGQ THEALASGAL HVDSNKVHTK VCSRCHIAGH MKTTCGKTSS YVKQGKCKSK 660 TQ

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence Send to blast

MDNPEIERAT STPRGGIPST PPGAKITAIA IADEPPPAPA RSDRVLGKRA RKDIAEGCSP  60
SPTATRAMRA GVDDSMEMHT GEFASDGVDD PQQCTPRSVG LESDVGRAIP TRNDSGTGNS  120
LYAVERVINA CLLFRSPGKS ERANSSSSRC GCKALLYLKR TDDDGWYVAE HRAEHNHALS  180
DSCGEKINWP SHSRIDIHTK GLIRHLRDNN VSLGKVYAII ASFFGTVRDI PFNKRALRSL  240
SHQMARQQAD DDIQRYNLTG NKFLTQIFEN RKRWAKPYFA REFCAGQTST QRSECANHLL  300
KKLISKNAPM HLFVSQYSKL LADRDAQEDR EETRKSGMFY VTNTIGLAEF TVKHVRSDDL  360
ERWQKTLFKV TVIGEMARLT CECGMCEHMG LLCHHIIRVI IHLDGQRIPD GNLMKRWTTC  420
ARDVLPPHLA AYRSEAGSMQ SKTFRHNVLY MAALELVQQG DLTVENFHSA MEGIAELKRK  480
LASAQPRSVS TEGTNDNSLG QSDDTPAPGV PPTSEQSCMV SSAPTPTTVE QNSPARNGVP  540
IQPPEPRRRR DRPTNSRLKH PADKPKRVAR TRFCKKCNKP GHNSATCVDG ERNHEAMAFG  600
ALHVEASKGQ THEALASGAL HVDSNKVHTK VCSRCHIAGH MKTTCGKTSS YVKQGKCKSK  660
TQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538779.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A2Z653	0.0	A2Z653_ORYSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	8e-18	FAR1 family protein