PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538785.1_FGP044

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 258aa MW: 29022.8 Da PI: 8.3206

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538785.1_FGP044	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	21.7	5.3e-07	18	41	2	25
NAM 2 ppGfrFhPtdeelvveyLkkkveg 25 pGfrFhPt+eel+ +yLk+ + KN538785.1_FGP044 18 LPGFRFHPTEEELLEFYLKQLYCS 41 59****************997655 PP
2	NAM	68.7	1.6e-21	63	123	70	128
NAM 70 tgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g r++r+t++g+Wkatg+d++v ++ ++l+glkktLv+y+grap+g+ktdWvm+eyrl KN538785.1_FGP044 63 GGGRPSRTTEHGFWKATGSDRAVRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 123 4789******************98777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	29.175	1	144	IPR003441	NAC domain
SuperFamily	SSF101941	4.05E-37	8	144	IPR003441	NAC domain
Pfam	PF02365	8.2E-18	19	123	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEQQRSRSTA AGGEVEQLPG FRFHPTEEEL LEFYLKQLYC SSNGCTRHHQ QWPVRRRAGG 60 GGGGGRPSRT TEHGFWKATG SDRAVRCAAD PKRLIGLKKT LVYYEGRAPR GTKTDWVMNE 120 YRLPDTMQLQ MQHDDMVLCK VYRKAVSLKE LEQRVAMEEL ARSTTSSGTH NTGSPLQQDS 180 SSISISSSSD AMKKEVVVVD EAAAAAHELV RPATLSLPQL EVARPQSGLE WMQEPFLTQL 240 RSPWMETWSP YYASVLNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-25	1	144	1	168	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538785.1_FGP044

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBank	CU406703	0.0	CU406703.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C111K18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643570.1	1e-147	NAC domain-containing protein 22-like
Swissprot	Q10S65	2e-68	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A0E0AEL7	1e-146	A0A0E0AEL7_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0HVR4	1e-146	A0A0E0HVR4_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0Q2U6	1e-146	A0A0E0Q2U6_ORYRU; Uncharacterized protein
TrEMBL	A2YH56	1e-146	A2YH56_ORYSI; Uncharacterized protein
TrEMBL	I1Q5F6	1e-146	I1Q5F6_ORYGL; Uncharacterized protein
TrEMBL	Q5Z7Q4	1e-146	Q5Z7Q4_ORYSJ; Os06g0726300 protein
STRING	OGLUM06G29360.1	1e-147	(Oryza glumipatula)
STRING	ORUFI06G29930.1	1e-147	(Oryza rufipogon)
STRING	OS06T0726300-00	1e-147	(Oryza sativa)
STRING	ONIVA06G30950.1	1e-147	(Oryza nivara)
STRING	ORGLA06G0236900.1	1e-147	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-47	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]