PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538795.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 195aa    MW: 21729.9 Da    PI: 10.101
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538795.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP67.61.5e-2154114371
            E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        +++Lr++++k   ++ek+e+ g++t+ne  ++    d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  KN538795.1_FGP009  54 GRGLRQFSMK---VCEKVESkGRTTYNE--QQY---DEKNIRRRVYDALNVLMAMEIISK-DKKEIQWKG 114
                        689*******...*****999******9..566...8899********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-104877IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.6E-2552114IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-1655115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.9E-1955114IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-2278119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440744.97E-18121183No hitNo description
SMARTSM011381.2E-8121192IPR014889Transcription factor DP, C-terminal
PfamPF087814.1E-16122183IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAAGAAAAST PISENTFLRL NDLDIHGDDA PSSQAPTSKK KKRGARAVGP DKGGRGLRQF  60
SMKVCEKVES KGRTTYNEQQ YDEKNIRRRV YDALNVLMAM EIISKDKKEI QWKGLPRTSI  120
NDIEDLQTEL VGLKSRIEKK NTYLQELQDQ FVGMQKLIQR NEQLYGSGNI PSGGVALPFI  180
LVQKVLTGRA SSYLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-2946119193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538795.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422291e-178AK242229.1 Oryza sativa Japonica Group cDNA, clone: J075175O16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628006.11e-121transcription factor-like protein DPB isoform X4
SwissprotQ9FNY26e-87DPB_ARATH; Transcription factor-like protein DPB
TrEMBLI1P7N41e-118I1P7N4_ORYGL; Uncharacterized protein
STRINGORGLA03G0038000.11e-119(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.15e-89Transcription factor DP