PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538800.1_FGP004

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 170aa MW: 18480.7 Da PI: 6.3043

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538800.1_FGP004	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.7	1.3e-15	2	43	15	56
HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k KN538800.1_FGP004 2 LELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHK 43 999*************************************99 PP
2	HD-ZIP_I/II	98.1	8.5e-32	1	80	13	92
HD-ZIP_I/II 13 lLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +LE sF+ee+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e+l KN538800.1_FGP004 1 MLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLV 80 69**************************************************************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	8.3E-5	1	49	IPR001356	Homeobox domain
PROSITE profile	PS50071	14.997	1	45	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-14	1	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.1E-13	2	44	IPR009057	Homeodomain-like
CDD	cd00086	4.34E-11	2	45	No hit	No description
Pfam	PF00046	6.5E-13	2	43	IPR001356	Homeobox domain
PRINTS	PR00031	1.1E-5	16	25	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	20	43	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	25	41	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MLELSFREER KLETGRKVHL ASELGLDPKQ VAVWFQNRRA RHKSKLLEEE FSKLKHAHDA 60 AILHKCHLEN EVLRLKERLV VTEEEVRRLR SAAGGHTASG EGGDIMGLGG GACVAGSPSS 120 SFSTGTCQPT SFGGGGGGDH LGDDDLVYVP EYGGYADNSV VEWFSLYGLI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538800.1_FGP004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121889	0.0	AK121889.1 Oryza sativa Japonica Group cDNA clone:J033105B17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646179.1	1e-103	homeobox-leucine zipper protein HOX14
Swissprot	Q7XI85	1e-104	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A0E0QAD2	1e-101	A0A0E0QAD2_ORYRU; Uncharacterized protein
TrEMBL	B8B7S8	1e-101	B8B7S8_ORYSI; Uncharacterized protein
STRING	ORUFI07G20840.1	1e-102	(Oryza rufipogon)
STRING	OS07T0581700-01	1e-102	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	9e-27	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]