PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538801.1_FGP005

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 487aa MW: 52532.9 Da PI: 7.2787

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538801.1_FGP005	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.3e-38	107	167	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++s KN538801.1_FGP005 107 PDKILPCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHVS 167 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	104	164	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	109	165	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.602	111	165	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	113	149	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MAALRQGDDP AIKLFGRTIP LLLDPAATAA DEVMPNLGNG VKTNNDIPLV SDKLLTVKGI 60 PFCPNNSKKN DLQGISRPDG RIEIDSMTED VKTQPDGSVP EKILKKPDKI LPCPRCNSME 120 TKFCYFNNYN VHQPRHFCRN CQRYWTAGGA MRNVPVGAGR RRNKHVSQYR QAMMTCNTTV 180 APGDVSDVVH HQVITHGSSL LPATLKENET PTEFISEVPP CKSSASILDI GEPNDTDLVP 240 LASGDNKEEK SCASSVVVSS CSENLMPDNA IMKEPNNRSG CCNGVALPFP TGPALVLPWS 300 LGWNSVALMP ATQFSTQPVL GLKDGIPCPP SWPPQLMVPA PGICTPVVPI PLVPPLWSCF 360 PGWPNGMWNA QCPGGNSTVV PSTAPNKISC SGSSSLVLGK HSREESLQEE EKTRNNLWVP 420 KTLRIDDPAE AAKSSIWATL GIKPEDKGIF KSFQPNVAKN GTAPESPQAL QANPAAFSRS 480 QSFQETT

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MAALRQGDDP AIKLFGRTIP LLLDPAATAA DEVMPNLGNG VKTNNDIPLV SDKLLTVKGI  60
PFCPNNSKKN DLQGISRPDG RIEIDSMTED VKTQPDGSVP EKILKKPDKI LPCPRCNSME  120
TKFCYFNNYN VHQPRHFCRN CQRYWTAGGA MRNVPVGAGR RRNKHVSQYR QAMMTCNTTV  180
APGDVSDVVH HQVITHGSSL LPATLKENET PTEFISEVPP CKSSASILDI GEPNDTDLVP  240
LASGDNKEEK SCASSVVVSS CSENLMPDNA IMKEPNNRSG CCNGVALPFP TGPALVLPWS  300
LGWNSVALMP ATQFSTQPVL GLKDGIPCPP SWPPQLMVPA PGICTPVVPI PLVPPLWSCF  360
PGWPNGMWNA QCPGGNSTVV PSTAPNKISC SGSSSLVLGK HSREESLQEE EKTRNNLWVP  420
KTLRIDDPAE AAKSSIWATL GIKPEDKGIF KSFQPNVAKN GTAPESPQAL QANPAAFSRS  480
QSFQETT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538801.1_FGP005

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066984	0.0	AK066984.1 Oryza sativa Japonica Group cDNA clone:J013091E10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635234.1	0.0	cyclic dof factor 2
TrEMBL	A0A0D9Y6R0	0.0	A0A0D9Y6R0_9ORYZ; Uncharacterized protein
STRING	OGLUM01G12710.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-61	cycling DOF factor 2