PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538806.1_FGP013

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 217aa MW: 23162.9 Da PI: 6.1036

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538806.1_FGP013	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.0004	163	179	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp C k+F+r nL+ KN538806.1_FGP013 163 FSCPVCRKTFNRYNNLQ 179 89**********99997 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEDAQTNLMI SRGHGHGHHH HQPELMKEFP FLSLISSASS CISSSGHQQQ QQQQDDDGHG 60 GHDRHQLLRY GCCSGNKQQE EEEEEVTVAL RIGLPAVSSP SPAMANHGAS ASSTGVAGDD 120 GGGGAMAGVG VEVESVRRSG GGGGGGQYWI PTAAQILAGA TQFSCPVCRK TFNRYNNLQC 180 AYGKCMGFEL RLDLLIRTMF DIAMTIVIIA YCEIIQT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538806.1_FGP013

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004184	0.0	AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBank	AP004191	0.0	AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624987.2	1e-47	zinc finger protein WIP5
TrEMBL	A0A0E0CH99	3e-68	A0A0E0CH99_9ORYZ; Uncharacterized protein
STRING	OMERI02G08320.1	5e-69	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP52293	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	2e-13	C2H2 family protein