PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538807.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 434aa MW: 48843.7 Da PI: 8.1105

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538807.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.6	5.6e-19	300	395	3	95
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 k+lt+sdv++ gr+v+pk+ ae+h + ++e+++l++ d + +W++k+++ ++ks++yvl+ + +Fvk++gL++gD+++++ + +++ KN538807.1_FGP003 300 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVMLKMDDfKLETTWNFKYRFwpNNKSRMYVLE-STGGFVKQHGLQTGDIFIIYKS-SES 389 89**********************888999****7778***998999999999.9*******************43.377 PP E..EEE CS B3 90 felvvk 95 ++lvv+ KN538807.1_FGP003 390 EKLVVR 395 777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.7E-25	297	397	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.1E-18	297	394	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.06E-22	297	395	No hit	No description
SMART	SM01019	4.4E-10	298	400	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.079	298	400	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-15	300	395	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MADTRGSTSS GGGDDRGREG HDDFAGGGQY NKYHRILEAV PSPLVRRENV VHHQYPTGLI 60 HYPSSTMPVA PCSYVPRYTM VPTSAMLPLQ HHHRQLQISQ ENFQDRVPSN NVAAPHLPSN 120 FQDLRPMCNG PPFMPFGQTA SNRNVLYQNL TPYSFNAWAS NNMPRNPVYT SYHPTAIEDH 180 HATPFHINNH DTDQGFFTVS TSFRVDQSFV HAPSPFPPVS SSSRSFSSAQ ISNGPTHAKK 240 AKKSDIKDQP IVLRRSDTES EKNDELDQTP ASEPSSMSQN SENLTIQRFN CREYCVILRK 300 ELTNSDVGNI GRIVMPKRDA EAHLPALHQR EGVMLKMDDF KLETTWNFKY RFWPNNKSRM 360 YVLESTGGFV KQHGLQTGDI FIIYKSSESE KLVVRGEKAI KPNAIMPVVD CSCKNELNNS 420 EECGFAISLL TKKT

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MADTRGSTSS GGGDDRGREG HDDFAGGGQY NKYHRILEAV PSPLVRRENV VHHQYPTGLI  60
HYPSSTMPVA PCSYVPRYTM VPTSAMLPLQ HHHRQLQISQ ENFQDRVPSN NVAAPHLPSN  120
FQDLRPMCNG PPFMPFGQTA SNRNVLYQNL TPYSFNAWAS NNMPRNPVYT SYHPTAIEDH  180
HATPFHINNH DTDQGFFTVS TSFRVDQSFV HAPSPFPPVS SSSRSFSSAQ ISNGPTHAKK  240
AKKSDIKDQP IVLRRSDTES EKNDELDQTP ASEPSSMSQN SENLTIQRFN CREYCVILRK  300
ELTNSDVGNI GRIVMPKRDA EAHLPALHQR EGVMLKMDDF KLETTWNFKY RFWPNNKSRM  360
YVLESTGGFV KQHGLQTGDI FIIYKSSESE KLVVRGEKAI KPNAIMPVVD CSCKNELNNS  420
EECGFAISLL TKKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9c_A	1e-33	289	392	4	106	B3 domain-containing transcription factor LEC2
6j9c_D	1e-33	289	392	4	106	B3 domain-containing transcription factor LEC2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription regulator that binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269\|PubMed:18025467}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538807.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK072874	0.0	AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635183.1	0.0	B3 domain-containing protein Os04g0676600
Swissprot	Q7XKC5	0.0	IDEFH_ORYSJ; B3 domain-containing protein Os04g0676600
TrEMBL	A0A0D3G1P2	0.0	A0A0D3G1P2_9ORYZ; Uncharacterized protein
TrEMBL	I1PQW6	0.0	I1PQW6_ORYGL; Uncharacterized protein
STRING	ORGLA04G0258500.1	0.0	(Oryza glaberrima)
STRING	OBART04G29550.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11817	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	7e-36	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]