PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538807.1_FGP016
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 202aa    MW: 21179.9 Da    PI: 11.7827
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538807.1_FGP016genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-0738731247
                       HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       ++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  KN538807.1_FGP016 38 FLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 73
                       777899***************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.17E-53774No hitNo description
SuperFamilySSF466895.38E-103779IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-113776IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.6E-63872IPR009057Homeodomain-like
PfamPF002496.2E-63873IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGRRGRLSPL SRSAGRGSPG RRTSTGWRDG NHNGCWLFLL GLEKYGKGDW RSISRNFVIS  60
RTPTQVASHA QKYFIRLNSM NRERRRSSIH DITSVNNGDT SAAQGPITGQ PNGPSANPGK  120
SSKQSPQPAN APPGVDAYGT TIGQPVGGPL VSAVGTPVTL PVPAAPHIAY GMHAPVPGAV  180
VPGAPVNMPP MPYPMPPPTS HG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538807.1_FGP016
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0686230.0AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence.
GenBankAK1061660.0AK106166.1 Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence.
GenBankAL6066680.0AL606668.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence.
GenBankAL7323500.0AL732350.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0101F08, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636999.11e-105transcription factor SRM1
SwissprotQ9FNN62e-62SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0D3G1P51e-105A0A0D3G1P5_9ORYZ; Uncharacterized protein
STRINGOBART04G29570.11e-106(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-50MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]