PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538809.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 335aa    MW: 37122 Da    PI: 4.7759
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538809.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like42.71.3e-13173219452
            G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                        l Wtp L ++F++a++ L G++ A Pk+i+++m+v+ +   +++ HLQ+
  KN538809.1_FGP011 173 LMWTPHLQKKFLHALQIL-GKD-ASPKNIKKIMGVDNIDCRQIAAHLQM 219
                        78****************.665.*************************8 PP
2Response_reg51.36.3e-18151232108
                        EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        +++d+++  ++    +l+ + ++ +v++++++ +al+ l+++   +Dl+l D+ m +m+G+++lk  re ++++++i+++++ ++ ++++++
  KN538809.1_FGP011  15 MVIDEDKCHADSTSCMLSaELNF-SVTVFTSPIKALDFLQNHAegVDLVLADVHMEEMNGFDFLKVARELHKSIQVIMMSTEMTMYTMKRCV 105
                        799999999999999***99999.******************999*********************************************** PP

                        HTTESEEEESS--HHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelv 108
                        k+Ga+  + Kp d   + 
  KN538809.1_FGP011 106 KLGAQFLVNKPLDAGTIK 123
                        ***********9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.04E-2211129IPR011006CheY-like superfamily
SMARTSM004482.5E-812126IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.7E-2212129No hitNo description
PROSITE profilePS5011025.61113130IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-1615123IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.36E-1415119No hitNo description
SuperFamilySSF466892.51E-9167220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-12168219IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-13173219IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAQNEGIPTG RLSAMVIDED KCHADSTSCM LSAELNFSVT VFTSPIKALD FLQNHAEGVD  60
LVLADVHMEE MNGFDFLKVA RELHKSIQVI MMSTEMTMYT MKRCVKLGAQ FLVNKPLDAG  120
TIKNLWQYVD LKVLRMEKIK DLLQGIGDES TCANETNSLA ENPKNDTKKK YYLMWTPHLQ  180
KKFLHALQIL GKDASPKNIK KIMGVDNIDC RQIAAHLQMQ ILSEDAEYDD VYAAMRRALQ  240
YGIVFDESKH SSDPSGDEDE QVVVGGDQDG CANEANDIDS SGDHHQVAAV VTKPCNANAS  300
QEIINKTTNS DGMQATKGSK AAVFRLVDYS ESDSD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538809.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629630.0AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880730.10.0two-component response regulator ORR29
SwissprotQ7XS690.0ORR29_ORYSJ; Two-component response regulator ORR29
TrEMBLB9FEK10.0B9FEK1_ORYSJ; Uncharacterized protein
STRINGORUFI04G09620.10.0(Oryza rufipogon)
STRINGOBART04G08380.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.17e-21response regulator 14