PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538809.1_FGP036
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 167aa    MW: 18385.9 Da    PI: 6.6236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538809.1_FGP036genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.34.9e-072411255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  KN538809.1_FGP036  2 RRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 41
                       9******************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0014146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-4241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-8245No hitNo description
SuperFamilySSF474597.33E-13259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-12358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
VRRERISERM KLLQSLVPGC NKITGKALML DEIINYVQSL QRQVEFLSMK LATMNPQLDF  60
DSHYMPSKDM SHMPVPAYPS GDPTTTTAFS YTGSPATADP FAAYNCWELD LHTAMQMGVT  120
ATGLSQDGPI TTMAPSPSPF SHHPPPHGFY GGQQQQGTTV NHMKAEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538809.1_FGP036
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086050.0AK108605.1 Oryza sativa Japonica Group cDNA clone:002-146-G10, full insert sequence.
GenBankFO6813950.0FO681395.1 Oryza rufipogon (W1943) Awn-1(An-1) full-length cDNA sequence: OR_W1943_cDNA_An-1, PCR product.
GenBankFO6814750.0FO681475.1 Oryza sativa ssp indica cv (Guangluai4) Awn-1(An-1) full-length cDNA sequence: OS_Guangluai4_cDNA_An-1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635665.23e-95LOW QUALITY PROTEIN: transcription factor bHLH62
TrEMBLA0A0D3FUI33e-98A0A0D3FUI3_9ORYZ; Uncharacterized protein
STRINGOBART04G08520.15e-99(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-34bHLH family protein