PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN538810.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 464aa MW: 50629 Da PI: 7.6979

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN538810.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	36.2	1.8e-11	183	223	89	128
NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++s+ ++ + lkk+Lvfykgra kg ktdW+mhe+rl KN538810.1_FGP001 183 QRPIYSSeATKCISLKKSLVFYKGRAAKGFKTDWMMHEFRL 223 57788864566699*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02517	1.2E-17	88	173	IPR003675	CAAX amino terminal protease
PROSITE profile	PS51005	13.223	92	253	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-12	184	253	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016020	Cellular Component	membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MANPSPMGCA VGVADGGAHH GGLWNIKEPF KLQNGWLLWA GVGLFGAIIS IALVGVAMTY 60 LNGEPPERET DSLVLLLPLI GSSSASTAFL VGITGVLAPI LEETVFRGFL MVSLTKWFPT 120 PVCILVSAAL FAFAHLTPGQ FPQLFILGVA LGFSYAQTHN LLTPITIHAF WNSGVILLLT 180 FLQRPIYSSE ATKCISLKKS LVFYKGRAAK GFKTDWMMHE FRLPSLTEPS LPKIPIDKKP 240 AKDIWAICKI FKKPNSMAQR ALSHPWGPQS TATTNSQFAS ESSSCSEEVA IPITQLNSQQ 300 CLQGRQQKPN NRQDGSSSKV INFKCSPSLT HQSDKDNHNC PVTLPFRTQT LQHMSGATSL 360 LLSITPGIIN SIYEASRNIR FGQTEPCNGY EVDWVIGTNG GIENSGEDPY TRTGTEYSTG 420 SECGIQQKIK FPFDLLGDPS DNWTSNINMP CEFPLTPNSY SHVQ

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MANPSPMGCA VGVADGGAHH GGLWNIKEPF KLQNGWLLWA GVGLFGAIIS IALVGVAMTY  60
LNGEPPERET DSLVLLLPLI GSSSASTAFL VGITGVLAPI LEETVFRGFL MVSLTKWFPT  120
PVCILVSAAL FAFAHLTPGQ FPQLFILGVA LGFSYAQTHN LLTPITIHAF WNSGVILLLT  180
FLQRPIYSSE ATKCISLKKS LVFYKGRAAK GFKTDWMMHE FRLPSLTEPS LPKIPIDKKP  240
AKDIWAICKI FKKPNSMAQR ALSHPWGPQS TATTNSQFAS ESSSCSEEVA IPITQLNSQQ  300
CLQGRQQKPN NRQDGSSSKV INFKCSPSLT HQSDKDNHNC PVTLPFRTQT LQHMSGATSL  360
LLSITPGIIN SIYEASRNIR FGQTEPCNGY EVDWVIGTNG GIENSGEDPY TRTGTEYSTG  420
SECGIQQKIK FPFDLLGDPS DNWTSNINMP CEFPLTPNSY SHVQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN538810.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005397	0.0	AP005397.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0643D11.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757877.2	1e-120	LOW QUALITY PROTEIN: protein FEZ
TrEMBL	A0A0E0QRD3	1e-165	A0A0E0QRD3_ORYRU; Uncharacterized protein
STRING	ORUFI09G10860.1	1e-166	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	5e-24	NAC domain containing protein 94